C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: establishment of cohesion 1 homolog 1 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025142 Esco1-001 ENSMUSG00000024293 10090 - 18:10566619-10610352 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025142
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025142 0.741±0.19 0.928±0.06 2.064±0.26 1.540±0.47 0.912±0.36 0.576±0.14 0.445±0.13 0.486±0.07 1.324±0.72 0.991±0.11 0.879±0.19 1.405±0.86 4.605±1.16 1.182±0.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NU CIL_0005NU_0002 CGP 18:10325177-10610352
CIL_00084R CIL_00084R_0002 VISTA 18:10435381-11036621
CIL_0005CM CIL_0005CM_0002 CGP 18:10566602-10628230

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 ISS chromatin
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0006275 ISS regulation of DNA replication
GO:0007062 IEA sister chromatid cohesion
GO:0016746 IEA transferase activity, transferring acyl groups
GO:0034421 IEA post-translational protein acetylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269214 ESCO1-001 protein_coding Homo_sapiens 0 3415
ENST00000383276 ESCO1-002 nonsense_mediated_decay Homo_sapiens 0 1934
ENST00000526316 RP11-313I2.6-001 processed_pseudogene Homo_sapiens 0 340
ENST00000527814 RP11-716D19.1-001 processed_pseudogene Homo_sapiens 0 326
ENST00000529105 CTD-2132H18.3-001 processed_pseudogene Homo_sapiens 0 363
ENST00000622333 ESCO1-201 protein_coding Homo_sapiens 0 1485

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