C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adaptor-related protein complex 3, sigma 1 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025357 Ap3s1-201 ENSMUSG00000024480 10090 + 18:46741917-46790826 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025357
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025357 14.299±2.97 63.436±7.44 7.718±0.84 16.691±7.37 11.407±8.30 16.967±2.38 1.706±0.11 5.980±1.95 10.106±1.90 4.735±2.70 2.065±0.37 17.077±6.02 23.192±6.64 18.270±2.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004L6 CIL_0004L6_0002 CGP 18:46732417-46790826

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005802 TAS trans-Golgi network
GO:0006886 TAS intracellular protein transport
GO:0008089 IMP anterograde axon cargo transport
GO:0008565 IEA protein transporter activity
GO:0016192 TAS vesicle-mediated transport
GO:0030123 IEA AP-3 adaptor complex
GO:0031410 IEA cytoplasmic vesicle
GO:0048490 IMP anterograde synaptic vesicle transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000316788 AP3S1-001 protein_coding Homo_sapiens 0 1688
ENST00000395548 AP3S1-003 retained_intron Homo_sapiens 0 1380
ENST00000407157 RP3-369A17.2-001 processed_pseudogene Homo_sapiens 0 440
ENST00000432577 RP11-365D23.4-001 processed_pseudogene Homo_sapiens 0 824
ENST00000505423 AP3S1-006 processed_transcript Homo_sapiens 0 678
ENST00000506430 AP3S1-008 nonsense_mediated_decay Homo_sapiens 0 784
ENST00000507436 AP3S1-007 retained_intron Homo_sapiens 0 409
ENST00000509055 AP3S1-005 retained_intron Homo_sapiens 0 300
ENST00000514118 AP3S1-004 processed_transcript Homo_sapiens 0 300
ENST00000515066 AP3S1-002 retained_intron Homo_sapiens 0 344
ENST00000605743 RP11-253I19.4-001 processed_pseudogene Homo_sapiens 0 416

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