C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphodiesterase 6A, cGMP-specific, rod, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000617647 PDE6A-202 ENSG00000132915 9606 - 5:149857955-149944793 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonLungOvaryPlacentaTestisENST00000617647
Transcript ID Brain Breast Colon Lung Ovary Placenta Testis
ENST00000617647 0.046±0.04 0.039±0.00 0.045±0.00 0.016±0.00 0.034±0.00 0.041±0.02 0.429±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JR CIL_0001JR_0002 CGP 5:149730298-149944793

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004114 IEA 3',5'-cyclic-nucleotide phosphodiesterase activity
GO:0005515 IEA protein binding
GO:0007165 IEA signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025468 Pde6a-001 protein_coding Mus_musculus 0 2163
ENSMUST00000135688 Pde6a-002 protein_coding Mus_musculus 0 532
ENSMUST00000025956 Pde6c-201 protein_coding Mus_musculus 0 403
ENSMUST00000112329 Pde6c-202 protein_coding Mus_musculus 0 265

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