C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphodiesterase 6A, cGMP-specific, rod, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000613228 PDE6A-201 ENSG00000132915 9606 - 5:149857957-149944793 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000613228
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000613228 0.109±0.00 0.154±0.00 0.017±0.00 0.042±0.02 0.048±0.03 0.056±0.01 0.097±0.00 0.055±0.00 0.069±0.02 0.007±0.00 0.098±0.00 0.011±0.00 1.288±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JR CIL_0001JR_0002 CGP 5:149730298-149944793

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004114 IEA 3',5'-cyclic-nucleotide phosphodiesterase activity
GO:0005515 IEA protein binding
GO:0007165 IEA signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025468 Pde6a-001 protein_coding Mus_musculus 0 2163
ENSMUST00000135688 Pde6a-002 protein_coding Mus_musculus 0 532
ENSMUST00000025956 Pde6c-201 protein_coding Mus_musculus 0 403
ENSMUST00000112329 Pde6c-202 protein_coding Mus_musculus 0 265
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000008 58
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00003 57

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