C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hepatoma-derived growth factor, related protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026094 Hdgfrp3-002 ENSMUSG00000025104 10090 - 7:81891974-81934459 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonOvaryTestisENSMUST00000026094
Transcript ID Adipose Adrenal Colon Ovary Testis
ENSMUST00000026094 3.533±0.34 5.041±2.33 1.556±0.38 8.745±2.84 2.573±1.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001L6 CIL_0001L6_0002 CGP 7:81859001-81934473
CIL_00037Q CIL_00037Q_0002 CGP 7:81881251-81992299

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 NAS chromatin binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0008083 IEA growth factor activity
GO:0008283 ISS cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000187762 TMEM38A-001 protein_coding Homo_sapiens 0.00000000000006 84
ENST00000299633 HDGFRP3-001 protein_coding Homo_sapiens 0 1236
ENST00000562702 HDGFRP3-003 protein_coding Homo_sapiens 0 575
ENST00000563404 HDGFRP3-005 nonsense_mediated_decay Homo_sapiens 0 246
ENST00000563790 HDGFRP3-004 nonsense_mediated_decay Homo_sapiens 0 769
ENST00000568129 HDGFRP3-002 retained_intron Homo_sapiens 0 276
ENST00000568294 HDGFRP3-006 protein_coding Homo_sapiens 0 562
ENST00000587861 QTRT1-005 retained_intron Homo_sapiens 0.000000001 69

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