C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026710 Usp16-001 ENSMUSG00000025616 10090 + 16:87454703-87483517 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleOvaryPlacentaENSMUST00000026710
Transcript ID Muscle Ovary Placenta
ENSMUST00000026710 8.773±0.87 13.557±0.16 7.454±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003CH CIL_0003CH_0002 CGP 16:87433407-87483517
CIL_000313 CIL_000313_0002 CGP 16:87454703-87495873

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 ISS transcription coactivator activity
GO:0004197 ISS cysteine-type endopeptidase activity
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0007067 ISS mitotic nuclear division
GO:0008270 ISS zinc ion binding
GO:0016578 ISS histone deubiquitination
GO:0035522 IMP monoubiquitinated histone H2A deubiquitination
GO:0042393 ISS histone binding
GO:0043130 ISS ubiquitin binding
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045901 ISS positive regulation of translational elongation
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0051289 ISS protein homotetramerization
GO:0070537 ISS histone H2A K63-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000334352 USP16-003 protein_coding Homo_sapiens 0 2599
ENST00000399973 USP16-006 protein_coding Homo_sapiens 0 370
ENST00000399975 USP16-001 protein_coding Homo_sapiens 0 2639
ENST00000399976 USP16-002 protein_coding Homo_sapiens 0 2658
ENST00000474835 USP16-004 retained_intron Homo_sapiens 0 1458
ENST00000485067 USP16-005 retained_intron Homo_sapiens 0 442

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