C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399976 USP16-002 ENSG00000156256 9606 + 21:29024629-29054488 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000399976
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000399976 3.811±0.00 5.861±0.00 0.763±0.00 3.077±0.00 3.818±1.59 1.125±0.19 1.424±0.88 3.692±0.88 3.836±0.00 0.987±0.00 5.290±2.32 5.164±4.26 5.980±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003CH CIL_0003CH_0001 CGP 21:29004384-29054488
CIL_000313 CIL_000313_0001 CGP 21:29024629-29073797

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 IDA transcription coactivator activity
GO:0004197 IMP cysteine-type endopeptidase activity
GO:0004221 IDA ubiquitin thiolesterase activity
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005634 IDA nucleus
GO:0005737 TAS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 ISS regulation of transcription from RNA polymerase II promoter
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0007049 TAS cell cycle
GO:0007067 IDA mitotic nuclear division
GO:0008270 IEA:IDA zinc ion binding
GO:0016578 IDA histone deubiquitination
GO:0035522 ISS monoubiquitinated histone H2A deubiquitination
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0042393 IDA histone binding
GO:0043130 IDA ubiquitin binding
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0045901 IMP positive regulation of translational elongation
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0051289 IPI protein homotetramerization
GO:0070537 IMP histone H2A K63-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026710 Usp16-001 protein_coding Mus_musculus 0 2658
ENSMUST00000119504 Usp16-006 protein_coding Mus_musculus 0 2207
ENSMUST00000144759 Usp16-004 nonsense_mediated_decay Mus_musculus 0 1360
ENSMUST00000131206 Usp16-003 retained_intron Mus_musculus 0 833
ENSMUST00000135399 Usp16-007 retained_intron Mus_musculus 0 604
ENSMUST00000146386 Usp16-005 retained_intron Mus_musculus 0 538
ENSMUST00000149656 Usp16-009 retained_intron Mus_musculus 0 444
ENSMUST00000177275 Usp16-012 retained_intron Mus_musculus 0 427
ENSMUST00000177538 Usp16-011 processed_transcript Mus_musculus 2.00386e-43 182

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