C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000474835 USP16-004 ENSG00000156256 9606 + 21:29024651-29054488 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastHeartKidneyLiverENST00000474835
Transcript ID Adrenal Bladder Breast Heart Kidney Liver
ENST00000474835 1.530±0.00 0.810±0.00 1.446±0.00 0.309±0.00 0.718±0.00 0.576±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003CH CIL_0003CH_0001 CGP 21:29004384-29054488
CIL_000313 CIL_000313_0001 CGP 21:29024629-29073797

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026710 Usp16-001 protein_coding Mus_musculus 0 1458
ENSMUST00000119504 Usp16-006 protein_coding Mus_musculus 0 1445
ENSMUST00000144759 Usp16-004 nonsense_mediated_decay Mus_musculus 0 1182
ENSMUST00000131206 Usp16-003 retained_intron Mus_musculus 0 833
ENSMUST00000135399 Usp16-007 retained_intron Mus_musculus 0 531
ENSMUST00000149656 Usp16-009 retained_intron Mus_musculus 0 444
ENSMUST00000177275 Usp16-012 retained_intron Mus_musculus 0 427
ENSMUST00000146386 Usp16-005 retained_intron Mus_musculus 0 311
ENSMUST00000177538 Usp16-011 processed_transcript Mus_musculus 2.99878e-43 182

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