C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ganglioside-induced differentiation-associated-protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026879 Gdap1-001 ENSMUSG00000025777 10090 + 1:17145362-17164271 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026879
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026879 0.051±0.00 0.310±0.15 0.126±0.03 14.089±3.65 0.170±0.06 0.255±0.15 0.032±0.02 0.040±0.01 0.010±0.01 0.024±0.01 1.885±0.59 0.236±0.05 0.023±0.01 0.318±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00008Q CIL_00008Q_0003 CGP 1:16964560-17164271
CIL_00008K CIL_00008K_0003 CGP 1:17145362-17630939

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000266 ISS mitochondrial fission
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0006626 ISS protein targeting to mitochondrion
GO:0016020 IEA membrane
GO:0031307 ISS integral component of mitochondrial outer membrane
GO:0032526 IDA response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000220822 GDAP1-001 protein_coding Homo_sapiens 0 1483
ENST00000434412 GDAP1-002 protein_coding Homo_sapiens 0 1371
ENST00000520797 GDAP1-008 processed_transcript Homo_sapiens 0 920
ENST00000521096 GDAP1-007 processed_transcript Homo_sapiens 0 965
ENST00000522568 GDAP1-003 nonsense_mediated_decay Homo_sapiens 0 1116
ENST00000524195 GDAP1-005 processed_transcript Homo_sapiens 2e-35 152
ENST00000524366 GDAP1-004 processed_transcript Homo_sapiens 0 370

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