C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026887 Atp5c1-002 ENSMUSG00000025781 10090 - 2:10056016-10080427 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026887
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026887 108.063±6.02 103.266±17.83 66.973±4.48 41.798±0.00 290.645±121.68 178.185±14.61 742.361±140.46 239.767±43.02 121.904±33.71 83.783±7.29 483.881±16.85 136.443±64.71 30.802±9.63 35.916±12.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WL CIL_0000WL_0002 CGP 2:9914552-10080510
CIL_0000PV CIL_0000PV_0002 CGP 2:10056016-10092806

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0015986 IEA ATP synthesis coupled proton transport
GO:0045261 IEA proton-transporting ATP synthase complex, catalytic core F(1)
GO:0046933 IEA proton-transporting ATP synthase activity, rotational mechanism
GO:0046961 IEA proton-transporting ATPase activity, rotational mechanism

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000335698 ATP5C1-002 protein_coding Homo_sapiens 0 1090
ENST00000356708 ATP5C1-001 protein_coding Homo_sapiens 0 1031
ENST00000441945 ATP5C1P1-001 processed_pseudogene Homo_sapiens 0 857
ENST00000460820 ATP5C1-008 processed_transcript Homo_sapiens 0 662
ENST00000472202 ATP5C1-004 retained_intron Homo_sapiens 0 446
ENST00000493053 ATP5C1-006 processed_transcript Homo_sapiens 0 931

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