C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription factor CP2-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027629 Tfcp2l1-001 ENSMUSG00000026380 10090 + 1:118627946-118685168 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027629
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027629 3.700±3.56 0.174±0.07 2.549±0.13 0.159±0.04 1.480±0.39 47.845±6.83 0.104±0.05 38.977±6.21 1.240±0.61 9.874±0.07 2.672±1.11 3.808±1.48 0.984±0.74 0.970±0.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001QO CIL_0001QO_0002 CGP 1:118389058-118685168
CIL_0007TZ CIL_0007TZ_0002 VISTA 1:118476526-119078049

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000902 IMP cell morphogenesis
GO:0002070 IMP epithelial cell maturation
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 ISA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007028 IMP cytoplasm organization
GO:0007431 IMP salivary gland development
GO:0008340 IMP determination of adult lifespan
GO:0016020 IDA membrane
GO:0045927 IMP positive regulation of growth

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263707 TFCP2L1-001 protein_coding Homo_sapiens 0 1799
ENST00000353231 CLEC7A-001 protein_coding Homo_sapiens 0.00000007 64
ENST00000424445 PPIL6-201 protein_coding Homo_sapiens 0.00000003 66
ENST00000464621 TFCP2L1-002 retained_intron Homo_sapiens 0 424
ENST00000513816 RAPGEF2-002 retained_intron Homo_sapiens 0.00000000001 77
ENST00000521072 PPIL6-001 protein_coding Homo_sapiens 0.00000003 66
ENST00000534609 CLEC7A-005 retained_intron Homo_sapiens 0.0000001 64
ENST00000543026 DDX11-014 retained_intron Homo_sapiens 0.0000002 62
ENST00000603918 BNIP3P28-001 processed_pseudogene Homo_sapiens 0.00000001 66

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