C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: C-type lectin domain family 7, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000353231 CLEC7A-001 ENSG00000172243 9606 - 12:10116777-10130241 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000353231
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000353231 1.049±0.00 2.009±0.00 0.105±0.00 1.337±0.00 0.191±0.00 0.374±0.00 1.272±0.00 0.639±0.00 2.193±0.13 0.056±0.02 0.487±0.22 1.630±0.52 0.754±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000TC CIL_0000TC_0001 CGP 12:10069554-10130258
CIL_0000T7 CIL_0000T7_0001 CGP 12:10116777-10172138

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002221 IDA pattern recognition receptor signaling pathway
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006910 IDA phagocytosis, recognition
GO:0006954 IEA inflammatory response
GO:0008037 IDA cell recognition
GO:0008329 IDA signaling pattern recognition receptor activity
GO:0009756 TAS carbohydrate mediated signaling
GO:0016021 TAS integral component of membrane
GO:0030246 IDA carbohydrate binding
GO:0042110 TAS T cell activation
GO:0042287 NAS MHC protein binding
GO:0042832 NAS defense response to protozoan
GO:0045087 IEA innate immune response
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000189018 Ccdc86-003 retained_intron Mus_musculus 0.00000000003 75
ENSMUST00000057256 6030458C11Rik-201 protein_coding Mus_musculus 0.0000000001 73
ENSMUST00000027629 Tfcp2l1-001 protein_coding Mus_musculus 0.00000007 64
ENSMUST00000169308 0610011F06Rik-006 protein_coding Mus_musculus 0.0000003 62
ENSMUST00000110456 0610011F06Rik-005 nonsense_mediated_decay Mus_musculus 0.0000003 62

Loading