C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: estrogen-related receptor gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027906 Esrrg-001 ENSMUSG00000026610 10090 + 1:187997827-188214885 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainHeartKidneyLiverLungOvaryPlacentaENSMUST00000027906
Transcript ID Adipose Adrenal Bladder Brain Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000027906 0.132±0.00 1.097±0.55 0.044±0.00 4.166±2.47 1.363±0.26 1.752±0.00 0.087±0.07 0.361±0.04 0.030±0.00 0.088±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JY CIL_0007JY_0002 UCNEbase 1:186701249-188943182

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 NAS DNA binding
GO:0003707 IEA steroid hormone receptor activity
GO:0003708 IEA retinoic acid receptor activity
GO:0004879 NAS ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005496 IEA steroid binding
GO:0005515 IPI protein binding
GO:0005516 NAS calmodulin binding
GO:0005634 NAS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 ISS regulation of transcription, DNA-templated
GO:0007275 NAS multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0048384 IEA retinoic acid receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000009104 esrrga-001 protein_coding Danio_rerio 0 1064
ENSDART00000126966 esrrga-201 protein_coding Danio_rerio 0 968
ENST00000359162 ESRRG-004 protein_coding Homo_sapiens 0 2135
ENST00000360012 ESRRG-005 protein_coding Homo_sapiens 0 2135
ENST00000361395 ESRRG-002 protein_coding Homo_sapiens 0 2137
ENST00000361525 ESRRG-201 protein_coding Homo_sapiens 0 2137
ENST00000366937 ESRRG-006 protein_coding Homo_sapiens 0 2039
ENST00000366938 ESRRG-007 protein_coding Homo_sapiens 0 2135
ENST00000366940 ESRRG-003 protein_coding Homo_sapiens 0 2135
ENST00000391890 ESRRG-202 protein_coding Homo_sapiens 0 2135
ENST00000408911 ESRRG-001 protein_coding Homo_sapiens 0 2420
ENST00000459955 ESRRG-016 protein_coding Homo_sapiens 0 311
ENST00000463665 ESRRG-011 protein_coding Homo_sapiens 0 1317
ENST00000469486 ESRRG-017 protein_coding Homo_sapiens 0 466
ENST00000469913 ESRRG-018 processed_transcript Homo_sapiens 0 257
ENST00000475275 ESRRG-008 protein_coding Homo_sapiens 0 1633
ENST00000481543 ESRRG-019 protein_coding Homo_sapiens 0 281
ENST00000487276 ESRRG-013 protein_coding Homo_sapiens 0 2137
ENST00000493603 ESRRG-010 protein_coding Homo_sapiens 0 2137
ENST00000493748 ESRRG-012 protein_coding Homo_sapiens 0 2121
ENST00000586199 ESRRG-023 nonsense_mediated_decay Homo_sapiens 5.99756e-43 178
ENST00000616180 ESRRG-203 protein_coding Homo_sapiens 0 2135

Loading