C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: estrogen-related receptor gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000359162 ESRRG-004 ENSG00000196482 9606 - 1:216503254-217089605 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonENST00000359162
Transcript ID Brain Breast Colon
ENST00000359162 2.169±0.67 0.049±0.00 0.140±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000127 CIL_000127_0002 CGP 1:215622894-217137755
CIL_0007JY CIL_0007JY_0001 UCNEbase 1:215651193-218349979
CIL_0008DN CIL_0008DN_0001 VISTA 1:216299074-216900116
CIL_000122 CIL_000122_0002 CGP 1:216503246-217631082

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0003708 IEA retinoic acid receptor activity
GO:0005496 IEA steroid binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA:IDA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0048384 IEA retinoic acid receptor signaling pathway
GO:0050682 ISS AF-2 domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110939 Esrrg-003 protein_coding Mus_musculus 0 2209
ENSMUST00000110938 Esrrg-002 protein_coding Mus_musculus 0 2135
ENSMUST00000027906 Esrrg-001 protein_coding Mus_musculus 0 2135
ENSMUST00000127489 Esrrg-004 protein_coding Mus_musculus 0 364
ENSDART00000126966 esrrga-201 protein_coding Danio_rerio 0 265

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