C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type V, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028280 Col5a1-001 ENSMUSG00000026837 10090 + 2:27886425-28039514 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028280
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028280 25.044±6.96 7.094±2.13 18.222±0.17 4.805±2.17 19.001±5.72 8.033±2.41 3.272±1.99 2.465±0.49 3.114±2.26 3.785±2.10 2.162±1.05 13.327±3.19 11.173±5.84 1.756±0.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000152 CIL_000152_0002 CGP 2:27676440-28039514
CIL_0001EU CIL_0001EU_0002 CGP 2:27886425-28084885

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001568 IMP blood vessel development
GO:0003007 IGI heart morphogenesis
GO:0005201 IDA extracellular matrix structural constituent
GO:0005515 IPI protein binding
GO:0005581 IDA collagen trimer
GO:0005588 IEA collagen type V trimer
GO:0005604 IDA basement membrane
GO:0007155 IEA cell adhesion
GO:0008201 IEA heparin binding
GO:0016477 IEA cell migration
GO:0030199 IMP collagen fibril organization
GO:0031012 IDA extracellular matrix
GO:0032964 IEA collagen biosynthetic process
GO:0035313 IEA wound healing, spreading of epidermal cells
GO:0035989 IGI tendon development
GO:0043206 IEA extracellular fibril organization
GO:0043394 IEA proteoglycan binding
GO:0043588 IMP skin development
GO:0045112 IEA integrin biosynthetic process
GO:0048407 IEA platelet-derived growth factor binding
GO:0048592 IEA eye morphogenesis
GO:0051128 IMP regulation of cellular component organization
GO:0070062 IEA extracellular vesicular exosome
GO:1903225 IEA negative regulation of endodermal cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000371817 COL5A1-001 protein_coding Homo_sapiens 0 6449
ENST00000371820 COL5A1-003 protein_coding Homo_sapiens 0 662
ENST00000460264 COL5A1-002 retained_intron Homo_sapiens 0 654
ENST00000464187 COL5A1-004 processed_transcript Homo_sapiens 0 425
ENST00000465877 COL5A1-007 retained_intron Homo_sapiens 0 407
ENST00000618395 COL5A1-201 protein_coding Homo_sapiens 0 6277

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