C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 35
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028382 Nup35-001 ENSMUSG00000026999 10090 + 2:80638816-80658902 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028382
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028382 6.123±0.91 3.312±0.49 6.239±1.68 10.372±6.81 5.415±2.94 2.514±0.56 2.328±0.18 5.075±0.40 8.676±8.17 4.599±1.07 3.190±0.53 5.818±1.70 7.525±5.37 18.611±9.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000Q8 CIL_0000Q8_0002 CGP 2:80500512-80632361
CIL_0000Q9 CIL_0000Q9_0002 CGP 2:80617045-80658906
CIL_0000QA CIL_0000QA_0002 CGP 2:80617236-82259879

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005643 IEA nuclear pore
GO:0015031 IEA protein transport
GO:0031965 IEA nuclear membrane
GO:0051028 IEA mRNA transport
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295119 NUP35-001 protein_coding Homo_sapiens 0 1181
ENST00000374930 NUP35-004 nonsense_mediated_decay Homo_sapiens 0 499
ENST00000409798 NUP35-002 protein_coding Homo_sapiens 0 1144
ENST00000422734 RP11-183E9.2-001 processed_pseudogene Homo_sapiens 0 828
ENST00000442895 NUP35-005 protein_coding Homo_sapiens 0 329
ENST00000446612 NUP35-006 protein_coding Homo_sapiens 0 466
ENST00000452137 NUP35-010 nonsense_mediated_decay Homo_sapiens 0 451
ENST00000455063 NUP35-008 protein_coding Homo_sapiens 0 259
ENST00000479162 NUP35-003 retained_intron Homo_sapiens 0 499
ENST00000497330 NUP35-009 processed_transcript Homo_sapiens 0 451

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