C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000QA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163002-ENSG00000170396 CGP 9606 2:183117513-184939492
GeneTranscriptPositionBiotype
ENSG00000163002 (NUP35)
nucleoporin 35kDa 		ENST00000295119 (NUP35-001) 183124355-183161680 protein_coding
ENST00000374930 (NUP35-004) 183124412-183161244 nonsense_mediated_decay
ENST00000409798 (NUP35-002) 183117514-183161438 protein_coding
ENST00000442895 (NUP35-005) 183117513-183130487 protein_coding
ENST00000446612 (NUP35-006) 183117514-183133623 protein_coding
ENST00000452137 (NUP35-010) 183124458-183133623 nonsense_mediated_decay
ENST00000455063 (NUP35-008) 183117538-183128457 protein_coding
ENST00000472844 (NUP35-007) 183117519-183120062 retained_intron
ENST00000479162 (NUP35-003) 183124419-183161680 retained_intron
ENST00000497330 (NUP35-009) 183124376-183131117 processed_transcript
ENSG00000170396 (ZNF804A)
zinc finger protein 804A 		ENST00000302277 (ZNF804A-001) 184598366-184939492 protein_coding
ENST00000613975 (ZNF804A-201) 184866365-184939489 protein_coding
ENSG00000177855 (CACYBPP2)
calcyclin binding protein pseudogene 2 		ENST00000453625 (CACYBPP2-001) 183607442-183608119 processed_pseudogene
ENSG00000213120 (LIN28AP1)
LIN28A pseudogene 1 		ENST00000429574 (LIN28AP1-001) 183260642-183261046 processed_pseudogene
ENSG00000234172 (AC093639.1)
 ENST00000441026 (AC093639.1-001) 183904529-183949112 lincRNA
ENSG00000272800 (RP11-438L19.1)
 ENST00000608537 (RP11-438L19.1-001) 183214319-183215400 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0000QA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026999-ENSMUSG00000070866 CGP 10090 2:80617236-82259879
GeneTranscriptPositionBiotype
ENSMUSG00000026999 (Nup35)
nucleoporin 35 		ENSMUST00000028382 (Nup35-001) 80638816-80658902 protein_coding
ENSMUST00000124377 (Nup35-002) 80638832-80656004 protein_coding
ENSMUST00000127926 (Nup35-004) 80644204-80653414 processed_transcript
ENSMUST00000135305 (Nup35-005) 80617236-80658906 processed_transcript
ENSMUST00000144697 (Nup35-003) 80639264-80646464 processed_transcript
ENSMUSG00000027001 (Dusp19)
dual specificity phosphatase 19 		ENSMUST00000028384 (Dusp19-001) 80617045-80631661 protein_coding
ENSMUST00000125033 (Dusp19-007) 80617231-80624272 processed_transcript
ENSMUST00000147290 (Dusp19-003) 80617100-80631730 processed_transcript
ENSMUST00000148084 (Dusp19-006) 80617226-80630824 processed_transcript
ENSMUST00000151204 (Dusp19-004) 80617266-80632361 processed_transcript
ENSMUSG00000064193 (Gm4735)
predicted gene 4735 		ENSMUST00000138679 (Gm4735-001) 80837141-80838442 processed_pseudogene
ENSMUSG00000070866 (Zfp804a)
zinc finger protein 804A 		ENSMUST00000047527 (Zfp804a-001) 82053222-82259879 protein_coding
ENSMUST00000127187 (Zfp804a-002) 82235173-82256880 processed_transcript
ENSMUSG00000082666 (Gm13677)
predicted gene 13677 		ENSMUST00000120739 (Gm13677-001) 82122517-82123111 processed_pseudogene
ENSMUSG00000084005 (Gm13701)
predicted gene 13701 		ENSMUST00000118105 (Gm13701-001) 80977838-80978138 processed_pseudogene
ENSMUSG00000084107 (Gm13700)
predicted gene 13700 		ENSMUST00000118624 (Gm13700-001) 80861155-80862282 processed_pseudogene
ENSMUSG00000086436 (Gm13690)
predicted gene 13690 		ENSMUST00000118989 (Gm13690-001) 80629284-80629568 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000QA_0001ENSG00000163002ENST00000295119ENST00000374930ENST00000409798ENST00000442895ENST00000446612ENST00000452137ENST00000455063ENST00000472844ENST00000479162ENST00000497330ENSG00000170396ENST00000302277ENST00000613975ENSG00000177855ENST00000453625ENSG00000213120ENST00000429574ENSG00000234172ENST00000441026ENSG00000272800ENST00000608537CIL_0000QA_0002ENSMUSG00000026999ENSMUST00000028382ENSMUST00000124377ENSMUST00000127926ENSMUST00000135305ENSMUST00000144697ENSMUSG00000027001ENSMUST00000028384ENSMUST00000125033ENSMUST00000147290ENSMUST00000148084ENSMUST00000151204ENSMUSG00000064193ENSMUST00000138679ENSMUSG00000070866ENSMUST00000047527ENSMUST00000127187ENSMUSG00000082666ENSMUST00000120739ENSMUSG00000084005ENSMUST00000118105ENSMUSG00000084107ENSMUST00000118624ENSMUSG00000086436ENSMUST00000118989
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000QA_0001ENSG00000163002ENST00000295119ENST00000374930ENST00000409798ENST00000446612ENST00000452137ENSG00000170396ENST00000302277ENST00000613975ENSG00000177855ENST00000453625ENSG00000213120ENST00000429574ENSG00000234172ENST00000441026ENSG00000272800ENST00000608537CIL_0000QA_0002ENSMUSG00000026999ENSMUST00000028382ENSMUST00000124377ENSMUST00000144697ENSMUSG00000027001ENSMUST00000028384ENSMUST00000147290ENSMUST00000151204ENSMUSG00000064193ENSMUST00000138679ENSMUSG00000070866ENSMUST00000047527ENSMUST00000127187ENSMUSG00000082666ENSMUST00000120739ENSMUSG00000084005ENSMUST00000118105ENSMUSG00000084107ENSMUST00000118624ENSMUSG00000086436ENSMUST00000118989
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163002 ENST00000295119 2.826±0.00 4.545±0.00 N/A 1.921±1.18 1.601±0.96 2.279±0.00 1.812±0.00 2.531±2.13 2.906±1.07 1.226±0.53 1.500±0.02 4.655±1.60 3.007±1.47 4.549±2.74
ENST00000374930 N/A N/A N/A 0.643±0.00 N/A 1.379±0.39 0.688±0.00 2.260±0.00 N/A 0.743±0.00 0.868±0.00 2.414±0.55 1.370±0.00 3.380±0.32
ENST00000409798 N/A N/A N/A N/A N/A 1.139±0.00 N/A N/A N/A N/A N/A N/A N/A 1.632±0.17
ENST00000442895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446612 N/A N/A 6.911±0.00 N/A N/A N/A N/A N/A N/A N/A 1.927±0.00 N/A N/A N/A
ENST00000452137 N/A N/A N/A N/A N/A N/A 0.752±0.00 N/A N/A 3.310±0.00 N/A N/A N/A N/A
ENST00000455063 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479162 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497330 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000170396 ENST00000302277 N/A 0.057±0.00 N/A 0.648±0.26 0.078±0.04 0.093±0.01 0.018±0.00 0.269±0.00 0.037±0.03 0.065±0.00 N/A 0.050±0.02 0.075±0.05 0.094±0.01
ENST00000613975 0.007±0.00 0.059±0.00 0.116±0.00 0.747±0.00 N/A N/A N/A 0.148±0.00 N/A 0.121±0.00 N/A 0.238±0.00 N/A 0.151±0.00
ENSG00000177855 ENST00000453625 0.047±0.00 0.049±0.00 N/A N/A N/A 0.015±0.00 0.032±0.00 0.016±0.00 0.043±0.00 0.256±0.00 N/A 0.073±0.05 0.022±0.00 0.063±0.00
ENSG00000213120 ENST00000429574 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.187±0.00 N/A N/A
ENSG00000234172 ENST00000441026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.085±0.00
ENSG00000272800 ENST00000608537 0.053±0.00 0.232±0.00 N/A 0.075±0.00 0.102±0.06 0.042±0.00 0.054±0.00 0.273±0.00 0.141±0.00 0.165±0.13 0.077±0.00 0.183±0.13 0.052±0.02 0.235±0.06
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026999 ENSMUST00000028382 6.123±0.91 3.312±0.49 6.239±1.68 10.372±6.81 5.415±2.94 2.514±0.56 2.328±0.18 5.075±0.40 8.676±8.17 4.599±1.07 3.190±0.53 5.818±1.70 7.525±5.37 18.611±9.75
ENSMUST00000124377 4.745±0.00 15.992±5.75 N/A 12.024±0.00 3.663±0.22 4.562±1.13 N/A 4.483±0.04 6.619±5.95 3.616±0.08 N/A 10.682±2.12 4.657±0.00 N/A
ENSMUST00000127926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135305 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.863±0.00
ENSMUSG00000027001 ENSMUST00000028384 4.841±0.75 4.082±0.91 2.758±0.45 5.372±0.23 3.150±0.76 2.153±0.57 2.448±0.45 3.305±0.64 2.773±0.94 3.600±0.87 1.417±0.19 3.515±0.74 3.268±1.10 0.403±0.00
ENSMUST00000125033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147290 N/A N/A 1.524±0.00 N/A N/A 2.275±0.00 N/A N/A N/A 2.062±0.34 N/A 4.536±0.54 N/A N/A
ENSMUST00000148084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151204 1.798±0.00 N/A 1.167±0.00 1.189±0.00 N/A N/A N/A N/A N/A N/A N/A 1.504±0.02 0.401±0.00 N/A
ENSMUSG00000064193 ENSMUST00000138679 13.557±5.37 2.816±0.74 0.612±0.09 3.598±3.01 9.227±4.10 3.548±0.58 1.383±0.29 7.212±2.31 2.450±2.99 2.275±0.29 0.069±0.05 9.066±2.75 12.770±13.16 4.212±1.87
ENSMUSG00000070866 ENSMUST00000047527 0.454±0.01 0.126±0.02 0.009±0.01 4.618±1.69 0.010±0.00 0.169±0.04 0.013±0.00 0.023±0.01 0.014±0.01 N/A 0.009±0.00 0.160±0.06 0.022±0.01 0.006±0.00
ENSMUST00000127187 N/A N/A N/A N/A N/A N/A N/A 0.039±0.00 0.002±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000082666 ENSMUST00000120739 0.074±0.00 N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A N/A 0.074±0.00 0.020±0.01 N/A
ENSMUSG00000084005 ENSMUST00000118105 0.939±0.00 0.448±0.02 0.087±0.02 0.155±0.10 N/A N/A N/A 0.260±0.00 0.080±0.00 0.257±0.00 N/A 0.408±0.00 0.035±0.00 N/A
ENSMUSG00000084107 ENSMUST00000118624 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.051±0.03
ENSMUSG00000086436 ENSMUST00000118989 1.248±0.64 1.469±0.67 1.116±0.31 1.513±0.10 1.665±0.70 1.807±0.33 0.851±0.45 0.473±0.25 0.558±0.25 1.352±0.53 0.546±0.17 1.591±0.73 0.555±0.18 0.959±0.30

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