C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Meis homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000340545 MEIS2-201 ENSG00000134138 9606 - 15:36891022-37101299 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartLiverOvaryPlacentaTestisENST00000340545
Transcript ID Colon Heart Liver Ovary Placenta Testis
ENST00000340545 0.745±0.00 0.830±0.00 0.673±0.00 2.336±1.37 1.318±0.13 0.370±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MM CIL_0007MM_0001 UCNEbase 15:35253766-37880700
CIL_00088L CIL_00088L_0001 VISTA 15:36372618-36973897
CIL_0008GX CIL_0008GX_0001 VISTA 15:36373931-36975330
CIL_00084J CIL_00084J_0001 VISTA 15:36391617-36991995
CIL_0006QS CIL_0006QS_0001 CGP 15:36579611-37101299
CIL_00087U CIL_00087U_0001 VISTA 15:36595901-37198492
CIL_0008KD CIL_0008KD_0001 VISTA 15:36599207-37200420
CIL_0008O9 CIL_0008O9_0001 VISTA 15:36624792-37227400
CIL_0008M1 CIL_0008M1_0001 VISTA 15:36648604-37250297
CIL_00096Q CIL_00096Q_0001 VISTA 15:36695888-37296972
CIL_0009D1 CIL_0009D1_0001 VISTA 15:36755403-37357754
CIL_00086F CIL_00086F_0001 VISTA 15:36779528-37380936
CIL_0006QR CIL_0006QR_0001 CGP 15:36889204-37967724

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 TAS negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0003712 ISS transcription cofactor activity
GO:0003714 TAS transcription corepressor activity
GO:0005515 IPI protein binding
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0008134 ISS transcription factor binding
GO:0043565 IDA sequence-specific DNA binding
GO:0045638 ISS negative regulation of myeloid cell differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110908 Meis2-013 protein_coding Mus_musculus 0 3958
ENSMUST00000110907 Meis2-001 protein_coding Mus_musculus 0 3860
ENSMUST00000110906 Meis2-006 protein_coding Mus_musculus 0 3727
ENSMUST00000074285 Meis2-014 protein_coding Mus_musculus 0 3579
ENSMUST00000102538 Meis2-012 protein_coding Mus_musculus 0 2100
ENSMUST00000028639 Meis2-011 protein_coding Mus_musculus 0 2100
ENSMUST00000120995 Meis2-003 processed_transcript Mus_musculus 0 1369
ENSMUST00000133990 Meis2-007 processed_transcript Mus_musculus 0 1022
ENSMUST00000151279 Meis2-010 processed_transcript Mus_musculus 0 1016
ENSMUST00000140461 Meis2-005 retained_intron Mus_musculus 0 985
ENSMUST00000068264 Meis1-001 protein_coding Mus_musculus 0 878
ENSMUST00000134314 Meis2-008 processed_transcript Mus_musculus 0 789
ENSMUST00000118661 Meis1-006 processed_transcript Mus_musculus 0 645
ENSDART00000062122 meis2a-001 protein_coding Danio_rerio 0 580
ENSMUST00000189640 Meis2-020 retained_intron Mus_musculus 0 503
ENSDART00000156455 meis2a-003 retained_intron Danio_rerio 0 451
ENSMUST00000118654 Meis2-002 retained_intron Mus_musculus 0 396
ENSMUST00000154671 Meis2-004 processed_transcript Mus_musculus 0 392
ENSMUST00000138526 Meis2-015 retained_intron Mus_musculus 0 357
ENSMUST00000177493 Meis2-018 processed_transcript Mus_musculus 0 335
ENSMUST00000150477 Meis2-017 processed_transcript Mus_musculus 0 215
ENSMUST00000135543 Meis2-009 retained_intron Mus_musculus 9.99967e-42 176
ENSMUST00000149217 Meis2-016 processed_transcript Mus_musculus 2e-39 169
ENSMUST00000177417 Meis1-008 protein_coding Mus_musculus 1e-30 139
ENSMUST00000144988 Meis1-005 protein_coding Mus_musculus 1e-30 139

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