C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptosomal-associated protein 25
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028727 Snap25-001 ENSMUSG00000027273 10090 + 2:136713453-136782428 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028727
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028727 0.044±0.02 8.532±2.90 0.464±0.06 220.916±270.56 0.145±0.05 1.622±0.28 0.464±0.08 0.160±0.06 0.074±0.09 0.077±0.03 0.021±0.00 0.101±0.05 0.021±0.00 0.046±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001ZQ CIL_0001ZQ_0003 CGP 2:136501910-136782428
CIL_00043K CIL_00043K_0002 CGP 2:136713453-136891389

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000149 IDA SNARE binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005802 IDA trans-Golgi network
GO:0005886 TAS plasma membrane
GO:0007269 IMP neurotransmitter secretion
GO:0010975 IGI regulation of neuron projection development
GO:0016020 IDA membrane
GO:0017075 ISO syntaxin-1 binding
GO:0030054 IEA cell junction
GO:0030424 ISO axon
GO:0031083 ISS BLOC-1 complex
GO:0031201 ISS SNARE complex
GO:0044295 ISO axonal growth cone
GO:0045202 IDA synapse
GO:0048306 ISS calcium-dependent protein binding
GO:0048471 IDA perinuclear region of cytoplasm
GO:0060291 IMP long-term synaptic potentiation
GO:0070032 IDA synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex
GO:0070044 ISO synaptobrevin 2-SNAP-25-syntaxin-1a complex
GO:0070201 IMP regulation of establishment of protein localization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000007584 snap25a-001 protein_coding Danio_rerio 0 608
ENSDART00000080927 snap25b-001 protein_coding Danio_rerio 0 558
ENSDART00000062738 snap25a-002 protein_coding Danio_rerio 0 520
ENST00000254976 SNAP25-003 protein_coding Homo_sapiens 0 1230
ENST00000304886 SNAP25-004 protein_coding Homo_sapiens 0 1107
ENST00000430336 SNAP25-002 protein_coding Homo_sapiens 0 501
ENST00000495883 SNAP25-005 processed_transcript Homo_sapiens 0 1107

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