C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptosomal-associated protein, 25kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000254976 SNAP25-003 ENSG00000132639 9606 + 20:10218830-10307418 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverLungMusclePlacentaTestisENST00000254976
Transcript ID Adrenal Brain Breast Colon Kidney Liver Lung Muscle Placenta Testis
ENST00000254976 0.142±0.00 466.339±194.05 0.149±0.00 1.131±0.00 0.093±0.00 0.297±0.17 0.709±0.00 0.172±0.01 0.402±0.00 1.415±1.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001ZQ CIL_0001ZQ_0002 CGP 20:9986126-10307418
CIL_00043K CIL_00043K_0001 CGP 20:10218830-10434222

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000149 IEA SNARE binding
GO:0001504 NAS neurotransmitter uptake
GO:0005515 IPI:IEA protein binding
GO:0005737 ISS cytoplasm
GO:0005802 IEA trans-Golgi network
GO:0005886 TAS plasma membrane
GO:0006112 TAS energy reserve metabolic process
GO:0007268 NAS synaptic transmission
GO:0007269 TAS neurotransmitter secretion
GO:0010975 IEA regulation of neuron projection development
GO:0014047 TAS glutamate secretion
GO:0016020 ISS:IEA membrane
GO:0016079 TAS synaptic vesicle exocytosis
GO:0016081 NAS synaptic vesicle docking involved in exocytosis
GO:0016192 IEA vesicle-mediated transport
GO:0030054 IEA cell junction
GO:0030426 ISS growth cone
GO:0031083 IDA BLOC-1 complex
GO:0031201 ISS SNARE complex
GO:0042734 TAS presynaptic membrane
GO:0043005 ISS neuron projection
GO:0044281 TAS small molecule metabolic process
GO:0045202 IEA synapse
GO:0048306 ISS calcium-dependent protein binding
GO:0048471 IEA perinuclear region of cytoplasm
GO:0050796 TAS regulation of insulin secretion
GO:0060291 IEA long-term synaptic potentiation
GO:0070032 IEA synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex
GO:0070201 IEA regulation of establishment of protein localization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028727 Snap25-001 protein_coding Mus_musculus 0 1230
ENSMUST00000110098 Snap25-002 protein_coding Mus_musculus 0 1014
ENSDART00000007584 snap25a-001 protein_coding Danio_rerio 0 606
ENSDART00000080927 snap25b-001 protein_coding Danio_rerio 0 523
ENSDART00000062738 snap25a-002 protein_coding Danio_rerio 0 518
ENSDART00000153064 snap25a-004 protein_coding Danio_rerio 0 368
ENSMUST00000125486 Snap25-003 retained_intron Mus_musculus 0 340
ENSDART00000137927 snap25a-003 processed_transcript Danio_rerio 0 196

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