C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptosomal-associated protein, 25kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000304886 SNAP25-004 ENSG00000132639 9606 + 20:10218833-10307418 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000304886
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000304886 0.050±0.00 0.106±0.00 0.237±0.00 67.094±0.00 0.331±0.20 1.578±0.95 0.108±0.01 0.497±0.00 0.505±0.00 1.365±0.86 0.340±0.21 2.244±1.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001ZQ CIL_0001ZQ_0002 CGP 20:9986126-10307418
CIL_00043K CIL_00043K_0001 CGP 20:10218830-10434222

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001504 NAS neurotransmitter uptake
GO:0005515 IPI:IEA protein binding
GO:0005737 ISS cytoplasm
GO:0005886 TAS plasma membrane
GO:0006112 TAS energy reserve metabolic process
GO:0007268 NAS synaptic transmission
GO:0007269 TAS neurotransmitter secretion
GO:0014047 TAS glutamate secretion
GO:0016020 ISS:IEA membrane
GO:0016079 TAS synaptic vesicle exocytosis
GO:0016081 NAS synaptic vesicle docking involved in exocytosis
GO:0016192 IEA vesicle-mediated transport
GO:0030054 IEA cell junction
GO:0030426 ISS growth cone
GO:0031083 IDA BLOC-1 complex
GO:0031201 ISS SNARE complex
GO:0042734 TAS presynaptic membrane
GO:0043005 ISS neuron projection
GO:0044281 TAS small molecule metabolic process
GO:0048306 ISS calcium-dependent protein binding
GO:0050796 TAS regulation of insulin secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110098 Snap25-002 protein_coding Mus_musculus 0 1175
ENSMUST00000028727 Snap25-001 protein_coding Mus_musculus 0 1107
ENSDART00000062738 snap25a-002 protein_coding Danio_rerio 0 667
ENSDART00000007584 snap25a-001 protein_coding Danio_rerio 0 529
ENSMUST00000125486 Snap25-003 retained_intron Mus_musculus 0 335
ENSDART00000153064 snap25a-004 protein_coding Danio_rerio 0 291
ENSDART00000137927 snap25a-003 processed_transcript Danio_rerio 2e-27 128

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