C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 16 (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028900 Vps16-001 ENSMUSG00000027411 10090 + 2:130424365-130444269 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028900
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028900 8.989±5.96 11.729±0.00 14.410±3.97 23.518±8.25 12.494±2.36 10.855±3.63 6.361±1.25 7.938±2.57 8.159±3.63 6.182±0.00 2.649±1.02 16.934±5.33 8.560±2.89 6.927±0.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0002 VISTA 2:130051805-130652389
CIL_00006D CIL_00006D_0002 CGP 2:130406478-130424701
CIL_00012E CIL_00012E_0002 CGP 2:130417247-130444269
CIL_00006B CIL_00006B_0002 CGP 2:130424339-130554026

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IDA actin binding
GO:0005515 IPI protein binding
GO:0005765 IEA lysosomal membrane
GO:0005768 IEA endosome
GO:0005769 IDA early endosome
GO:0005770 IEA late endosome
GO:0005884 IDA actin filament
GO:0006886 IEA intracellular protein transport
GO:0030424 IEA axon
GO:0030897 IEA HOPS complex
GO:0043025 IEA neuronal cell body
GO:0046718 IMP viral entry into host cell
GO:0051015 IEA actin filament binding
GO:0055037 IEA recycling endosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380393 PTPRA-003 protein_coding Homo_sapiens 0 721
ENST00000380443 VPS16-006 protein_coding Homo_sapiens 0 1698
ENST00000380445 VPS16-001 protein_coding Homo_sapiens 0 3219
ENST00000380469 VPS16-003 protein_coding Homo_sapiens 0 1550
ENST00000417508 VPS16-004 protein_coding Homo_sapiens 0 835
ENST00000453689 VPS16-005 protein_coding Homo_sapiens 0 652
ENST00000466415 VPS16-007 processed_transcript Homo_sapiens 0 337
ENST00000481812 VPS16-008 processed_transcript Homo_sapiens 0 778
ENST00000487461 VPS16-002 processed_transcript Homo_sapiens 0 521

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