C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 38
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029014 Rbm38-201 ENSMUSG00000027510 10090 + 2:173021902-173034725 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029014
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029014 11.091±1.73 12.138±1.15 30.565±1.80 5.760±3.59 35.521±14.42 17.038±1.49 54.184±6.05 5.007±1.06 70.909±88.27 11.240±0.33 64.108±5.87 18.125±7.70 30.658±18.49 4.841±1.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YW CIL_0008YW_0002 VISTA 2:172561962-173164167
CIL_0008TD CIL_0008TD_0002 VISTA 2:172564603-173165839
CIL_0008HJ CIL_0008HJ_0002 VISTA 2:172734798-173336840
CIL_0008BA CIL_0008BA_0002 VISTA 2:172748983-173356071
CIL_00030G CIL_00030G_0002 CGP 2:173020498-173119525

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003729 IMP mRNA binding
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0010830 IDA regulation of myotube differentiation
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342690 RBM38-005 nonsense_mediated_decay Homo_sapiens 0 278
ENST00000344785 RBM38-003 nonsense_mediated_decay Homo_sapiens 0 490
ENST00000356208 RBM38-001 protein_coding Homo_sapiens 0 881
ENST00000440234 RBM38-004 protein_coding Homo_sapiens 0 459

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