C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 38
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000440234 RBM38-004 ENSG00000132819 9606 + 20:57391428-57407713 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LungENST00000440234
Transcript ID Lung
ENST00000440234 0.491±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YW CIL_0008YW_0001 VISTA 20:56856738-57458908
CIL_0008TD CIL_0008TD_0001 VISTA 20:56859467-57462541
CIL_0008HJ CIL_0008HJ_0001 VISTA 20:57109440-57710361
CIL_0008BA CIL_0008BA_0001 VISTA 20:57139654-57744237
CIL_00030G CIL_00030G_0001 CGP 20:57391407-57525652

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003729 IDA mRNA binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005829 IDA cytosol
GO:0006397 IEA mRNA processing
GO:0006977 IDA DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0006978 IDA DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator
GO:0007049 IEA cell cycle
GO:0007050 IDA cell cycle arrest
GO:0008285 IDA negative regulation of cell proliferation
GO:0008380 IEA RNA splicing
GO:0030154 IEA cell differentiation
GO:0043484 IDA regulation of RNA splicing
GO:0044822 IDA poly(A) RNA binding
GO:0070935 IDA 3'-UTR-mediated mRNA stabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029014 Rbm38-201 protein_coding Mus_musculus 0 459
ENSMUST00000173393 Rbm38-001 protein_coding Mus_musculus 0 459
ENSMUST00000155512 Rbm38-002 retained_intron Mus_musculus 0 326
ENSMUST00000173878 Rbm38-007 nonsense_mediated_decay Mus_musculus 0 315
ENSMUST00000173720 Rbm38-008 nonsense_mediated_decay Mus_musculus 0 265

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