C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 38
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027510 Rbm38 10090 + 2:173020498-173034734 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029014 Rbm38-201 173021902-173034725 protein_coding
  ENSMUST00000130430 Rbm38-003 173023050-173034700 retained_intron
  ENSMUST00000155512 Rbm38-002 173021913-173034728 retained_intron
  ENSMUST00000173393 Rbm38-001 173020498-173034734 protein_coding
  ENSMUST00000173720 Rbm38-008 173022111-173033650 nonsense_mediated_decay
  ENSMUST00000173878 Rbm38-007 173021899-173033913 nonsense_mediated_decay
  ENSMUST00000173979 Rbm38-005 173022831-173034178 protein_coding
  ENSMUST00000173997 Rbm38-006 173022438-173033709 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029014ENSMUST00000130430ENSMUST00000155512ENSMUST00000173393ENSMUST00000173878ENSMUST00000173979ENSMUST00000173997
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029014 11.091±1.73 12.138±1.15 30.565±1.80 5.760±3.59 35.521±14.42 17.038±1.49 54.184±6.05 5.007±1.06 70.909±88.27 11.240±0.33 64.108±5.87 18.125±7.70 30.658±18.49 4.841±1.86
ENSMUST00000130430 N/A N/A N/A N/A 1.672±0.00 N/A N/A N/A N/A N/A N/A 2.243±1.20 N/A N/A
ENSMUST00000155512 N/A 3.669±0.54 N/A 0.125±0.00 12.203±0.74 N/A N/A N/A 16.109±0.00 N/A N/A 1.492±0.00 2.104±0.00 N/A
ENSMUST00000173393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.173±0.00
ENSMUST00000173878 7.419±0.84 27.763±4.54 20.132±0.00 6.900±0.00 65.006±23.81 20.967±1.69 48.881±0.34 2.759±0.50 31.367±33.58 14.232±2.78 N/A 24.316±2.97 21.569±0.32 4.502±1.00
ENSMUST00000173979 11.472±1.62 N/A N/A 5.444±0.00 N/A N/A N/A N/A 96.029±0.00 7.175±0.00 N/A 35.834±6.72 N/A N/A
ENSMUST00000173997 N/A N/A N/A 12.512±0.00 76.753±43.56 N/A N/A N/A 44.429±79.58 N/A N/A 62.257±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YW CIL_0008YW_0002 VISTA 2:172561962-173164167
CIL_0008TD CIL_0008TD_0002 VISTA 2:172564603-173165839
CIL_0008HJ CIL_0008HJ_0002 VISTA 2:172734798-173336840
CIL_0008BA CIL_0008BA_0002 VISTA 2:172748983-173356071
CIL_00030G CIL_00030G_0002 CGP 2:173020498-173119525

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003729 IMP mRNA binding
GO:0003730 IEA mRNA 3'-UTR binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005829 IEA cytosol
GO:0006397 IEA mRNA processing
GO:0006977 IEA DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0006978 IEA DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator
GO:0007050 IEA cell cycle arrest
GO:0008285 IEA negative regulation of cell proliferation
GO:0008380 IEA RNA splicing
GO:0010830 IDA regulation of myotube differentiation
GO:0030154 IEA cell differentiation
GO:0043484 IEA regulation of RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0070935 IEA 3'-UTR-mediated mRNA stabilization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058818 rbm38 RNA binding motif protein 38 protein_coding Danio_rerio
ENSG00000132819 RBM38 RNA binding motif protein 38 protein_coding Homo_sapiens

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