C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sal-like 1a (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000111842 sall1a-001 ENSDARG00000074319 7955 + 7:38769437-38782878 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000111842
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000111842 2.659±0.45 12.165±3.95 9.848±0.17 1.881±0.00 0.642±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0005 UCNEbase 7:36945649-39061792

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0035118 IMP embryonic pectoral fin morphogenesis
GO:0045743 IGI positive regulation of fibroblast growth factor receptor signaling pathway
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029061 Sall4-001 protein_coding Mus_musculus 4e-38 165
ENSMUST00000150588 Sall4-006 protein_coding Mus_musculus 7e-21 104
ENST00000251020 SALL1-001 protein_coding Homo_sapiens 0 196
ENST00000438101 SALL1P1-001 processed_pseudogene Homo_sapiens 9e-29 134
ENST00000440970 SALL1-201 protein_coding Homo_sapiens 0 196
ENST00000536229 SALL3-006 protein_coding Homo_sapiens 0 246
ENST00000537592 SALL3-001 protein_coding Homo_sapiens 0 246
ENST00000570206 SALL1-003 protein_coding Homo_sapiens 0 196
ENST00000572106 SALL3-002 protein_coding Homo_sapiens 0 246
ENST00000575389 SALL3-002 protein_coding Homo_sapiens 0 246
ENST00000576809 SALL3-001 protein_coding Homo_sapiens 0 246
ENST00000612458 SALL3-203 protein_coding Homo_sapiens 0 246
ENST00000614625 SALL3-202 protein_coding Homo_sapiens 0 246
ENST00000614883 SALL3-204 protein_coding Homo_sapiens 0 246
ENST00000616649 SALL3-201 protein_coding Homo_sapiens 0 246

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