C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NMD3 ribosome export adaptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000351193 NMD3-001 ENSG00000169251 9606 + 3:161221290-161252307 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000351193
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000351193 12.096±0.00 8.603±0.00 1.601±0.00 6.434±1.63 8.567±1.00 7.201±4.80 8.416±2.80 12.864±0.00 7.657±0.41 11.048±1.68 5.441±2.85 9.655±1.11 5.925±2.30 7.792±2.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001Z8 CIL_0001Z8_0001 CGP 3:160755602-161105384
CIL_0001Z9 CIL_0001Z9_0001 CGP 3:161083883-161253532
CIL_0004K1 CIL_0004K1_0002 CGP 3:161104696-161372880

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000055 IMP ribosomal large subunit export from nucleus
GO:0005654 IDA nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0030674 IDA protein binding, bridging
GO:0043023 IDA ribosomal large subunit binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029358 Nmd3-001 protein_coding Mus_musculus 0 2078
ENSMUST00000127211 Nmd3-002 retained_intron Mus_musculus 0 776
ENSMUST00000143041 Nmd3-003 nonsense_mediated_decay Mus_musculus 0 505
ENSMUST00000150210 Nmd3-007 retained_intron Mus_musculus 0 481
ENSMUST00000135266 Nmd3-005 processed_transcript Mus_musculus 0 459
ENSMUST00000143249 Nmd3-006 protein_coding Mus_musculus 0 270
ENSMUST00000149680 Nmd3-004 retained_intron Mus_musculus 0 224

Loading