C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ras-like without CAAX 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368322 RIT1-002 ENSG00000143622 9606 - 1:155900274-155910915 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartKidneyLiverLungPlacentaENST00000368322
Transcript ID Colon Heart Kidney Liver Lung Placenta
ENST00000368322 5.101±0.00 3.028±0.00 6.378±0.00 1.311±0.00 9.083±0.00 3.723±0.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000898 CIL_000898_0001 VISTA 1:155789635-156392759
CIL_0008P5 CIL_0008P5_0001 VISTA 1:155795688-156399252
CIL_0000CZ CIL_0000CZ_0002 CGP 1:155859509-155911404

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005516 TAS calmodulin binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005886 IEA plasma membrane
GO:0006184 IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 TAS:IEA signal transduction
GO:0007264 IEA:TAS small GTPase mediated signal transduction
GO:0007265 IDA Ras protein signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0048011 TAS neurotrophin TRK receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029692 Rit1-001 protein_coding Mus_musculus 0 785
ENSMUST00000172252 Rit1-007 protein_coding Mus_musculus 0 656
ENSMUST00000172333 Rit1-006 nonsense_mediated_decay Mus_musculus 0 656
ENSMUST00000171645 Rit1-004 protein_coding Mus_musculus 0 460
ENSMUST00000166234 Rit1-003 retained_intron Mus_musculus 0 320
ENSMUST00000170377 Rit1-002 nonsense_mediated_decay Mus_musculus 0 320
ENSMUST00000172187 Rit1-008 retained_intron Mus_musculus 0 257
ENSMUST00000165846 Rit1-005 retained_intron Mus_musculus 0 220

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