C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ras-like without CAAX 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368323 RIT1-001 ENSG00000143622 9606 - 1:155897808-155911404 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000368323
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000368323 8.172±0.00 1.017±0.00 3.089±0.00 2.292±1.13 3.124±1.02 3.001±0.30 1.021±0.11 3.429±1.15 1.144±0.51 7.612±0.93 1.800±0.00 7.525±4.42 3.368±1.86 6.319±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000898 CIL_000898_0001 VISTA 1:155789635-156392759
CIL_0008P5 CIL_0008P5_0001 VISTA 1:155795688-156399252
CIL_0000CZ CIL_0000CZ_0002 CGP 1:155859509-155911404

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005516 TAS calmodulin binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0006184 IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 TAS:IEA signal transduction
GO:0007264 IEA:TAS small GTPase mediated signal transduction
GO:0007265 IDA Ras protein signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0048011 TAS neurotrophin TRK receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029692 Rit1-001 protein_coding Mus_musculus 0 787
ENSMUST00000172252 Rit1-007 protein_coding Mus_musculus 0 656
ENSMUST00000172333 Rit1-006 nonsense_mediated_decay Mus_musculus 0 656
ENSMUST00000171645 Rit1-004 protein_coding Mus_musculus 0 460
ENSMUST00000166234 Rit1-003 retained_intron Mus_musculus 0 322
ENSMUST00000170377 Rit1-002 nonsense_mediated_decay Mus_musculus 0 322
ENSMUST00000172187 Rit1-008 retained_intron Mus_musculus 0 257
ENSMUST00000165846 Rit1-005 retained_intron Mus_musculus 0 222

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