C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypyrimidine tract binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029780 Ptbp2-201 ENSMUSG00000028134 10090 - 3:119718742-119783388 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029780
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029780 2.635±1.10 2.615±0.32 13.555±3.74 40.882±22.73 1.578±0.54 2.712±0.45 2.429±0.24 1.905±0.45 1.625±0.60 3.013±1.01 2.996±0.68 4.262±0.92 1.393±0.48 15.354±4.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00005S CIL_00005S_0002 CGP 3:118562129-119783388
CIL_0007J2 CIL_0007J2_0002 UCNEbase 3:118659230-121102450

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005681 IDA spliceosomal complex
GO:0006376 IDA mRNA splice site selection
GO:0033119 IEA negative regulation of RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:2000177 IMP regulation of neural precursor cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000038648 ptbp2b-001 protein_coding Danio_rerio 0 351
ENSDART00000135075 ptbp2b-003 processed_transcript Danio_rerio 0 279
ENSDART00000149789 ptbp2b-004 protein_coding Danio_rerio 3e-38 165
ENST00000370197 PTBP2-004 protein_coding Homo_sapiens 0 2532
ENST00000370198 PTBP2-003 protein_coding Homo_sapiens 0 2512
ENST00000426398 PTBP2-002 protein_coding Homo_sapiens 0 2549
ENST00000459735 PTBP2-010 processed_transcript Homo_sapiens 0 1007
ENST00000460706 PTBP2-009 processed_transcript Homo_sapiens 0 773
ENST00000462433 PTBP2-011 processed_transcript Homo_sapiens 0 425
ENST00000476419 PTBP2-008 processed_transcript Homo_sapiens 0 1661
ENST00000476783 PTBP2-006 processed_transcript Homo_sapiens 0 767
ENST00000482253 PTBP2-005 processed_transcript Homo_sapiens 0 2335
ENST00000492905 PTBP2-007 processed_transcript Homo_sapiens 0 749
ENST00000609116 PTBP2-001 protein_coding Homo_sapiens 0 2636

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