C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypyrimidine tract binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000426398 PTBP2-002 ENSG00000117569 9606 + 1:96721822-96814793 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000426398
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000426398 1.375±0.00 4.172±0.00 2.119±0.00 6.759±0.73 1.528±0.00 5.041±2.49 1.009±0.00 2.315±1.91 6.940±6.35 0.796±0.00 2.263±0.91 0.822±0.04 10.218±1.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007J2 CIL_0007J2_0001 UCNEbase 1:95311769-97837577
CIL_0007C5 CIL_0007C5_0002 CGP 1:96721665-97921049

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0033119 IDA negative regulation of RNA splicing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029780 Ptbp2-201 protein_coding Mus_musculus 0 2549
ENSDART00000038648 ptbp2b-001 protein_coding Danio_rerio 0 313
ENSDART00000135075 ptbp2b-003 processed_transcript Danio_rerio 0 224
ENSDART00000149789 ptbp2b-004 protein_coding Danio_rerio 2e-34 152

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