C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007J2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
PTBP2 UCNEbase 9606 1:95311769-97837577
GeneTranscriptPositionBiotype
ENSG00000117569 (PTBP2)
polypyrimidine tract binding protein 2 		ENST00000370197 (PTBP2-004) 96721810-96814793 protein_coding
ENST00000370198 (PTBP2-003) 96721810-96814793 protein_coding
ENST00000426398 (PTBP2-002) 96721822-96814793 protein_coding
ENST00000459735 (PTBP2-010) 96784948-96812928 processed_transcript
ENST00000460706 (PTBP2-009) 96721792-96771475 processed_transcript
ENST00000462433 (PTBP2-011) 96806811-96812928 processed_transcript
ENST00000476419 (PTBP2-008) 96721822-96813488 processed_transcript
ENST00000476783 (PTBP2-006) 96785194-96813447 processed_transcript
ENST00000482253 (PTBP2-005) 96721665-96813711 processed_transcript
ENST00000492905 (PTBP2-007) 96785194-96813447 processed_transcript
ENST00000609116 (PTBP2-001) 96721783-96823738 protein_coding
ENSG00000137970 (RPL7P9)
ribosomal protein L7 pseudogene 9 		ENST00000468715 (RPL7P9-001) 96678874-96679620 processed_pseudogene
ENSG00000188641 (DPYD)
dihydropyrimidine dehydrogenase 		ENST00000306031 (DPYD-002) 97719758-97921049 protein_coding
ENST00000370192 (DPYD-001) 97077743-97921023 protein_coding
ENST00000460019 (DPYD-003) 97855030-97920997 processed_transcript
ENST00000474241 (DPYD-004) 97691207-97721654 retained_intron
ENSG00000216037 (AL356479.1)
 ENST00000401218 (AL356479.1-201) 95504976-95505063 miRNA
ENSG00000223229 (RN7SKP270)
RNA, 7SK small nuclear pseudogene 270 		ENST00000411297 (RN7SKP270-201) 96695856-96696167 misc_RNA
ENSG00000225923 (RP4-736I12.1)
 ENST00000439625 (RP4-736I12.1-001) 96390652-96391393 processed_pseudogene
ENSG00000226128 (RPL26P9)
ribosomal protein L26 pseudogene 9 		ENST00000457466 (RPL26P9-001) 97585862-97586294 processed_pseudogene
ENSG00000228057 (SEC63P1)
SEC63 homolog (S. cerevisiae) pseudogene 1 		ENST00000425785 (SEC63P1-001) 97545701-97546958 processed_pseudogene
ENSG00000228502 (EEF1A1P11)
eukaryotic translation elongation factor 1 alpha 1 pseudogene 11 		ENST00000415278 (EEF1A1P11-001) 96446930-96448318 processed_pseudogene
ENSG00000228504 (RP4-586O15.1)
 ENST00000423410 (RP4-586O15.1-001) 95310928-95318263 lincRNA
ENSG00000228971 (RP11-286B14.1)
 ENST00000411798 (RP11-286B14.1-004) 95510340-95515464 lincRNA
ENST00000440116 (RP11-286B14.1-003) 95510116-95514729 lincRNA
ENST00000456933 (RP11-286B14.1-001) 95510167-95782342 lincRNA
ENSG00000230434 (RP11-14O19.1)
 ENST00000438093 (RP11-14O19.1-001) 95351251-95352254 lincRNA
ENSG00000230718 (RP11-272L13.2)
 ENST00000441166 (RP11-272L13.2-001) 97774669-97775026 processed_pseudogene
ENSG00000231987 (RP5-898J17.1)
 ENST00000435311 (RP5-898J17.1-001) 96254069-96374125 lincRNA
ENSG00000232542 (DPYD-IT1)
DPYD intronic transcript 1 (non-protein coding) 		ENST00000424982 (DPYD-IT1-001) 97394154-97420141 sense_intronic
ENSG00000233907 (FLJ31662)
uncharacterized LOC440594 		ENST00000424943 (FLJ31662-001) 95474737-95479356 lincRNA
ENSG00000234226 (NDUFS5P2)
NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) pseudogene 2 		ENST00000484004 (NDUFS5P2-001) 96584422-96584727 processed_pseudogene
ENSG00000235777 (DPYD-AS2)
DPYD antisense RNA 2 		ENST00000422259 (DPYD-AS2-002) 97796965-97798066 antisense
ENST00000431362 (DPYD-AS2-001) 97796921-97797868 antisense
ENSG00000237954 (RP11-14O19.2)
 ENST00000426881 (RP11-14O19.2-001) 95356229-95381000 lincRNA
ENST00000427695 (RP11-14O19.2-002) 95356235-95380972 lincRNA
ENSG00000265771 (AL592205.2)
 ENST00000577912 (AL592205.2-201) 96935545-96935663 miRNA
CIL_0007J2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
PTBP2 UCNEbase 10090 3:118659230-121102450
GeneTranscriptPositionBiotype
ENSMUSG00000028134 (Ptbp2)
polypyrimidine tract binding protein 2 		ENSMUST00000029780 (Ptbp2-201) 119718742-119783388 protein_coding
ENSMUSG00000033308 (Dpyd)
dihydropyrimidine dehydrogenase 		ENSMUST00000039177 (Dpyd-001) 118562129-119432918 protein_coding
ENSMUST00000126254 (Dpyd-003) 118562130-118799119 retained_intron
ENSMUST00000129148 (Dpyd-005) 118811222-118899831 retained_intron
ENSMUST00000149101 (Dpyd-004) 118562180-118674773 retained_intron
ENSMUST00000150950 (Dpyd-002) 118562177-118783279 retained_intron
ENSMUSG00000094593 (Gm24744)
predicted gene, 24744 		ENSMUST00000116833 (Gm24744-201) 119831937-119832057 miRNA
ENSMUSG00000096196 (Gm26137)
predicted gene, 26137 		ENSMUST00000116701 (Gm26137-201) 119837904-119838024 miRNA
ENSMUSG00000098097 (6530403H02Rik)
RIKEN cDNA 6530403H02 gene 		ENSMUST00000182099 (6530403H02Rik-005) 120772730-120886691 lincRNA
ENSMUST00000182124 (6530403H02Rik-001) 120604109-120886733 lincRNA
ENSMUST00000183168 (6530403H02Rik-003) 120694809-120886714 lincRNA
ENSMUST00000183276 (6530403H02Rik-004) 120690459-120886732 lincRNA
CIL_0007J2_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
PTBP2 UCNEbase 7955 2:17989041-18279338
GeneTranscriptPositionBiotype
ENSDARG00000010267 (dpydb)
dihydropyrimidine dehydrogenase b 		ENSDART00000100133 (dpydb-001) 18017414-18244676 protein_coding
ENSDART00000124724 (dpydb-201) 17988789-18244675 protein_coding
ENSDARG00000015901 (ptbp2b)
polypyrimidine tract binding protein 2b 		ENSDART00000038648 (ptbp2b-001) 18274382-18292829 protein_coding
ENSDART00000135075 (ptbp2b-003) 18276194-18279290 processed_transcript
ENSDART00000141722 (ptbp2b-002) 18276205-18285016 nonsense_mediated_decay
ENSDART00000149789 (ptbp2b-004) 18278440-18284435 protein_coding
CIL_0007J2_0004 (Click to Hide/Show)
Source ID Type Tax ID Position
PTBP2 UCNEbase 7955 24:31567679-32405289
GeneTranscriptPositionBiotype
ENSDARG00000015230 (ptbp2a)
polypyrimidine tract binding protein 2a 		ENSDART00000046928 (ptbp2a-201) 31678855-31705272 protein_coding
ENSDART00000123275 (ptbp2a-001) 31678866-31705105 protein_coding
ENSDART00000132080 (ptbp2a-003) 31700715-31703587 retained_intron
ENSDARG00000086853 (DPYD (4 of 5))
dihydropyrimidine dehydrogenase 		ENSDART00000124978 (DPYD (4 of 5)-001) 31750590-31817408 protein_coding
ENSDARG00000089675 (CR855273.1)
Uncharacterized protein 		ENSDART00000123719 (CR855273.1-201) 31881188-32089479 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007J2_0001ENSG00000117569ENST00000370197ENST00000370198ENST00000426398ENST00000459735ENST00000460706ENST00000462433ENST00000476419ENST00000476783ENST00000482253ENST00000492905ENST00000609116ENSG00000137970ENST00000468715ENSG00000188641ENST00000306031ENST00000370192ENST00000460019ENST00000474241ENSG00000216037ENST00000401218ENSG00000223229ENST00000411297ENSG00000225923ENST00000439625ENSG00000226128ENST00000457466ENSG00000228057ENST00000425785ENSG00000228502ENST00000415278ENSG00000228504ENST00000423410ENSG00000228971ENST00000411798ENST00000440116ENST00000456933ENSG00000230434ENST00000438093ENSG00000230718ENST00000441166ENSG00000231987ENST00000435311ENSG00000232542ENST00000424982ENSG00000233907ENST00000424943ENSG00000234226ENST00000484004ENSG00000235777ENST00000422259ENST00000431362ENSG00000237954ENST00000426881ENST00000427695ENSG00000265771ENST00000577912CIL_0007J2_0002ENSMUSG00000028134ENSMUST00000029780ENSMUSG00000033308ENSMUST00000039177ENSMUST00000126254ENSMUST00000129148ENSMUST00000149101ENSMUST00000150950ENSMUSG00000094593ENSMUST00000116833ENSMUSG00000096196ENSMUST00000116701ENSMUSG00000098097ENSMUST00000182099ENSMUST00000182124ENSMUST00000183168ENSMUST00000183276CIL_0007J2_0003ENSDARG00000010267ENSDART00000100133ENSDART00000124724ENSDARG00000015901ENSDART00000038648ENSDART00000135075ENSDART00000141722ENSDART00000149789CIL_0007J2_0004ENSDARG00000015230ENSDART00000046928ENSDART00000123275ENSDART00000132080ENSDARG00000086853ENSDART00000124978ENSDARG00000089675ENSDART00000123719
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007J2_0001ENSG00000117569ENST00000370197ENST00000370198ENST00000426398ENST00000460706ENST00000462433ENST00000476419ENST00000609116ENSG00000137970ENST00000468715ENSG00000188641ENST00000306031ENST00000370192ENST00000460019ENSG00000216037ENST00000401218ENSG00000223229ENST00000411297ENSG00000225923ENST00000439625ENSG00000226128ENST00000457466ENSG00000228057ENST00000425785ENSG00000228502ENST00000415278ENSG00000228504ENST00000423410ENSG00000228971ENST00000411798ENST00000440116ENST00000456933ENSG00000230434ENST00000438093ENSG00000230718ENST00000441166ENSG00000231987ENST00000435311ENSG00000232542ENST00000424982ENSG00000233907ENST00000424943ENSG00000234226ENST00000484004ENSG00000235777ENST00000422259ENST00000431362ENSG00000237954ENST00000426881ENSG00000265771ENST00000577912CIL_0007J2_0002ENSMUSG00000028134ENSMUST00000029780ENSMUSG00000033308ENSMUST00000039177ENSMUST00000126254ENSMUST00000129148ENSMUST00000149101ENSMUSG00000094593ENSMUST00000116833ENSMUSG00000096196ENSMUST00000116701ENSMUSG00000098097ENSMUST00000182099ENSMUST00000182124ENSMUST00000183168ENSMUST00000183276CIL_0007J2_0003ENSDARG00000010267ENSDART00000100133ENSDARG00000015901ENSDART00000038648ENSDART00000141722CIL_0007J2_0004ENSDARG00000015230ENSDART00000046928ENSDART00000123275ENSDARG00000086853ENSDART00000124978ENSDARG00000089675ENSDART00000123719
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000117569 ENST00000370197 1.368±0.00 N/A N/A 3.422±1.30 1.215±0.54 2.450±0.00 1.281±0.00 N/A N/A 2.166±0.00 1.306±0.00 2.091±0.32 0.299±0.00 4.323±0.59
ENST00000370198 N/A N/A N/A 2.642±0.00 1.277±0.00 N/A 0.728±0.00 1.041±0.00 N/A N/A 1.307±0.00 1.641±0.00 0.346±0.00 N/A
ENST00000426398 1.375±0.00 4.172±0.00 2.119±0.00 6.759±0.73 1.528±0.00 5.041±2.49 1.009±0.00 2.315±1.91 6.940±6.35 0.796±0.00 N/A 2.263±0.91 0.822±0.04 10.218±1.28
ENST00000459735 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460706 N/A N/A 2.060±0.00 N/A 4.191±0.00 N/A 1.014±0.00 N/A N/A 2.571±0.00 N/A N/A N/A N/A
ENST00000462433 N/A N/A N/A N/A N/A N/A N/A 3.740±0.00 N/A N/A 8.121±0.00 3.978±0.00 1.312±0.00 24.972±0.00
ENST00000476419 N/A N/A N/A N/A N/A N/A 0.619±0.00 N/A N/A N/A 1.145±0.00 N/A N/A N/A
ENST00000476783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482253 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492905 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609116 N/A N/A N/A 0.653±0.00 0.689±0.00 N/A N/A 0.083±0.00 1.329±0.00 0.285±0.15 0.321±0.15 N/A N/A N/A
ENSG00000137970 ENST00000468715 0.087±0.00 0.128±0.00 1.095±0.00 1.589±1.53 2.058±1.97 4.124±3.89 2.205±2.19 3.284±3.27 12.050±0.00 2.842±2.72 7.136±0.00 9.215±14.29 0.119±0.09 0.162±0.00
ENSG00000188641 ENST00000306031 N/A N/A N/A 0.674±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000370192 8.609±0.00 4.201±0.00 2.688±0.00 0.773±0.25 4.608±0.54 7.048±2.83 2.249±0.70 6.212±0.86 7.441±0.36 7.212±2.03 1.857±0.39 4.245±3.07 1.475±0.45 5.009±0.00
ENST00000460019 N/A N/A 5.911±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000216037 ENST00000401218 N/A 0.495±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223229 ENST00000411297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.156±0.00
ENSG00000225923 ENST00000439625 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.011±0.00 N/A N/A N/A N/A
ENSG00000226128 ENST00000457466 N/A N/A 0.167±0.00 0.906±0.00 N/A 1.556±0.00 0.235±0.00 1.552±0.00 N/A 0.692±0.00 N/A 0.052±0.00 N/A N/A
ENSG00000228057 ENST00000425785 0.159±0.00 0.105±0.00 0.083±0.00 0.066±0.05 0.055±0.02 0.059±0.04 0.048±0.00 0.038±0.02 0.071±0.02 0.114±0.09 0.008±0.00 0.062±0.03 0.053±0.00 0.077±0.01
ENSG00000228502 ENST00000415278 1.119±0.00 0.876±0.00 0.040±0.00 0.213±0.07 0.666±0.22 0.599±0.51 0.081±0.00 0.413±0.17 0.312±0.16 0.416±0.20 0.346±0.00 0.612±0.35 0.693±0.55 0.428±0.07
ENSG00000228504 ENST00000423410 N/A N/A N/A 0.226±0.16 N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.804±8.59
ENSG00000228971 ENST00000411798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.050±0.00
ENST00000440116 N/A N/A N/A 6.599±4.25 N/A N/A N/A N/A 1.046±0.00 N/A N/A 0.041±0.00 N/A N/A
ENST00000456933 N/A 0.111±0.00 N/A N/A 0.444±0.00 0.219±0.00 0.061±0.02 0.037±0.00 N/A 0.100±0.00 N/A 0.083±0.00 N/A 0.180±0.02
ENSG00000230434 ENST00000438093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.577±2.20
ENSG00000230718 ENST00000441166 N/A 0.125±0.00 N/A 0.030±0.00 N/A 0.173±0.00 N/A N/A 0.637±0.00 1.897±0.00 N/A 0.087±0.00 0.056±0.00 N/A
ENSG00000231987 ENST00000435311 0.005±0.00 0.038±0.00 N/A N/A 0.040±0.00 N/A 0.013±0.00 0.023±0.00 N/A N/A N/A N/A N/A 0.038±0.00
ENSG00000232542 ENST00000424982 0.069±0.00 1.454±0.00 N/A 0.470±0.00 0.645±0.00 0.258±0.00 0.377±0.00 1.713±1.19 0.757±0.70 0.180±0.00 0.237±0.00 0.839±0.00 0.314±0.00 1.369±0.59
ENSG00000233907 ENST00000424943 0.145±0.00 0.689±0.00 0.016±0.00 0.711±0.00 0.567±0.00 0.204±0.00 0.185±0.00 0.467±0.00 0.201±0.00 0.148±0.00 0.101±0.00 0.069±0.02 0.045±0.00 0.268±0.19
ENSG00000234226 ENST00000484004 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.039±0.00 N/A N/A N/A
ENSG00000235777 ENST00000422259 N/A N/A N/A N/A N/A N/A 0.023±0.00 N/A N/A 0.166±0.09 N/A N/A N/A 0.585±0.39
ENST00000431362 N/A N/A N/A 0.088±0.00 0.122±0.00 0.325±0.00 N/A N/A N/A 0.371±0.00 N/A 0.172±0.00 N/A 0.239±0.00
ENSG00000237954 ENST00000426881 N/A 0.203±0.00 N/A 0.019±0.00 N/A N/A 0.051±0.00 0.074±0.00 N/A 0.220±0.17 0.016±0.00 0.224±0.00 N/A 0.074±0.01
ENST00000427695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000265771 ENST00000577912 0.245±0.00 0.677±0.00 N/A 0.636±0.00 0.605±0.00 0.592±0.00 0.592±0.00 0.920±0.00 1.879±0.00 N/A 1.472±0.00 7.319±0.00 N/A 0.103±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028134 ENSMUST00000029780 2.635±1.10 2.615±0.32 13.555±3.74 40.882±22.73 1.578±0.54 2.712±0.45 2.429±0.24 1.905±0.45 1.625±0.60 3.013±1.01 2.996±0.68 4.262±0.92 1.393±0.48 15.354±4.95
ENSMUSG00000033308 ENSMUST00000039177 5.533±0.51 4.860±1.06 2.975±0.23 0.634±0.37 2.805±0.32 3.150±0.65 1.309±0.18 13.229±1.41 40.760±38.09 1.219±0.11 0.421±0.08 4.062±1.10 0.225±0.24 0.709±0.28
ENSMUST00000126254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.019±0.00 N/A
ENSMUST00000129148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A
ENSMUST00000149101 N/A N/A N/A 2.555±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150950 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000094593 ENSMUST00000116833 N/A N/A N/A 7.632±0.00 N/A N/A N/A N/A 2.357±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000096196 ENSMUST00000116701 N/A N/A N/A 11.067±0.00 N/A N/A N/A N/A 2.357±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000098097 ENSMUST00000182099 0.480±0.21 N/A 0.366±0.03 N/A N/A N/A N/A 0.344±0.22 N/A N/A N/A 0.430±0.00 N/A N/A
ENSMUST00000182124 0.019±0.00 N/A 0.009±0.00 0.014±0.00 N/A N/A N/A 0.020±0.01 N/A N/A N/A N/A N/A 0.030±0.00
ENSMUST00000183168 N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.049±0.00
ENSMUST00000183276 N/A N/A N/A N/A N/A N/A N/A 0.113±0.03 N/A 0.132±0.00 N/A 0.045±0.00 N/A 0.090±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000010267 ENSDART00000100133 N/A N/A N/A 0.404±0.06 N/A N/A 1.267±1.22 18.728±9.59 6.148±0.00 N/A N/A N/A N/A N/A
ENSDART00000124724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000015901 ENSDART00000038648 N/A N/A N/A 6.945±2.53 N/A N/A 2.947±2.06 0.762±0.00 N/A N/A 0.795±0.00 N/A N/A N/A
ENSDART00000135075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000141722 N/A N/A N/A N/A N/A N/A N/A N/A 0.332±0.00 N/A N/A N/A N/A N/A
ENSDART00000149789 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000015230 ENSDART00000046928 N/A N/A N/A N/A N/A N/A 0.830±0.00 N/A N/A N/A 0.441±0.00 N/A N/A N/A
ENSDART00000123275 N/A N/A N/A 3.299±2.25 N/A N/A 1.734±1.26 2.117±0.00 0.941±0.00 N/A 0.949±0.00 N/A N/A N/A
ENSDART00000132080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000086853 ENSDART00000124978 N/A N/A N/A 0.774±0.50 N/A N/A 1.768±0.70 0.733±0.15 N/A N/A 0.320±0.00 N/A N/A N/A
ENSDARG00000089675 ENSDART00000123719 N/A N/A N/A 1.402±0.41 N/A N/A 1.319±0.41 0.566±0.00 0.025±0.00 N/A 0.149±0.00 N/A N/A N/A

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