C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypyrimidine tract binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370197 PTBP2-004 ENSG00000117569 9606 + 1:96721810-96814793 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000370197
Transcript ID Adipose Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000370197 1.368±0.00 3.422±1.30 1.215±0.54 2.450±0.00 1.281±0.00 2.166±0.00 1.306±0.00 2.091±0.32 0.299±0.00 4.323±0.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007J2 CIL_0007J2_0001 UCNEbase 1:95311769-97837577
CIL_0007C5 CIL_0007C5_0002 CGP 1:96721665-97921049

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0003729 IEA mRNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0006376 IEA mRNA splice site selection
GO:0006397 IEA mRNA processing
GO:0033119 IDA negative regulation of RNA splicing
GO:0044822 IDA poly(A) RNA binding
GO:2000177 IEA regulation of neural precursor cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029780 Ptbp2-201 protein_coding Mus_musculus 0 2532
ENSDART00000038648 ptbp2b-001 protein_coding Danio_rerio 0 298
ENSDART00000135075 ptbp2b-003 processed_transcript Danio_rerio 0 224
ENSDART00000149789 ptbp2b-004 protein_coding Danio_rerio 2e-34 152

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