C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PNN-interacting serine/arginine-rich protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000478777 PNISR-008 ENSG00000132424 9606 - 6:99401461-99425308 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000478777
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000478777 11.454±0.00 5.366±0.00 9.345±0.00 11.734±0.00 5.592±0.00 2.977±0.00 12.549±0.00 18.148±0.00 1.786±0.00 10.054±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001Y7 CIL_0001Y7_0002 CGP 6:99369400-99425331
CIL_0001YC CIL_0001YC_0002 CGP 6:99398051-99521728

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000185001 Pnisr-004 nonsense_mediated_decay Mus_musculus 0 2374
ENSMUST00000108229 Pnisr-002 protein_coding Mus_musculus 0 1919
ENSMUST00000098238 Pnisr-005 protein_coding Mus_musculus 0 1546
ENSMUST00000029911 Pnisr-001 protein_coding Mus_musculus 0 1546
ENSMUST00000150368 Pnisr-007 processed_transcript Mus_musculus 0 774
ENSMUST00000138419 Pnisr-009 processed_transcript Mus_musculus 0 603
ENSMUST00000156136 Pnisr-011 processed_transcript Mus_musculus 0 497
ENSMUST00000148561 Pnisr-012 processed_transcript Mus_musculus 0 446
ENSMUST00000150927 Pnisr-010 processed_transcript Mus_musculus 0 379
ENSMUST00000152666 Pnisr-003 processed_transcript Mus_musculus 0 379
ENSDART00000133071 pnisr-006 retained_intron Danio_rerio 2e-29 135
ENSDART00000138109 pnisr-005 retained_intron Danio_rerio 3e-22 111
ENSDART00000123980 pnisr-002 protein_coding Danio_rerio 3e-22 111
ENSDART00000124515 pnisr-001 protein_coding Danio_rerio 3e-22 111

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