C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PNN-interacting serine/arginine-rich protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000438806 PNISR-201 ENSG00000132424 9606 - 6:99399964-99425331 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000438806
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000438806 7.259±0.00 18.826±0.00 5.924±4.35 7.269±4.77 5.490±2.79 3.153±1.78 6.568±5.17 2.444±0.00 8.575±0.00 2.169±1.74 18.650±4.81 8.993±8.98 33.135±22.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001Y7 CIL_0001Y7_0002 CGP 6:99369400-99425331
CIL_0001YC CIL_0001YC_0002 CGP 6:99398051-99521728

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000098238 Pnisr-005 protein_coding Mus_musculus 0 3831
ENSMUST00000029911 Pnisr-001 protein_coding Mus_musculus 0 3171
ENSMUST00000108229 Pnisr-002 protein_coding Mus_musculus 0 1546
ENSMUST00000185001 Pnisr-004 nonsense_mediated_decay Mus_musculus 0 1546
ENSMUST00000150368 Pnisr-007 processed_transcript Mus_musculus 0 774
ENSMUST00000138419 Pnisr-009 processed_transcript Mus_musculus 0 603
ENSMUST00000156136 Pnisr-011 processed_transcript Mus_musculus 0 497
ENSMUST00000133241 Pnisr-013 processed_transcript Mus_musculus 0 494
ENSMUST00000148561 Pnisr-012 processed_transcript Mus_musculus 0 472
ENSMUST00000150927 Pnisr-010 processed_transcript Mus_musculus 0 379
ENSMUST00000152666 Pnisr-003 processed_transcript Mus_musculus 0 379
ENSDART00000138109 pnisr-005 retained_intron Danio_rerio 2.99878e-43 182
ENSDART00000123980 pnisr-002 protein_coding Danio_rerio 2.99878e-43 182
ENSDART00000124515 pnisr-001 protein_coding Danio_rerio 2.99878e-43 182
ENSDART00000133071 pnisr-006 retained_intron Danio_rerio 0.000000000003 79

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