C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypyrimidine tract binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000040308 ptbp3-201 ENSDARG00000043757 7955 - 10:11105114-11169009 protein_coding

Danio rerio EnsemblZv9

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000040308
Transcript ID Brain Heart Kidney Muscle
ENSDART00000040308 3.234±0.51 4.729±0.00 1.707±0.25 1.764±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000228 CIL_000228_0001 CGP 10:11105114-11246479

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030076 Ptbp3-001 protein_coding Mus_musculus 0.000000000000003 90
ENSMUST00000102883 Ptbp3-002 protein_coding Mus_musculus 0.000000000000002 90
ENSMUST00000173699 Ptbp3-008 protein_coding Mus_musculus 0.000000000000001 90
ENSMUST00000174586 Ptbp3-009 protein_coding Mus_musculus 0.000000000000003 90
ENST00000334318 PTBP3-201 protein_coding Homo_sapiens 0.000000000000004 90
ENST00000343327 PTBP3-005 protein_coding Homo_sapiens 0.000000000000001 90
ENST00000349038 PTBP1-003 protein_coding Homo_sapiens 0 300
ENST00000350092 PTBP1-019 protein_coding Homo_sapiens 0 303
ENST00000356948 PTBP1-001 protein_coding Homo_sapiens 0 303
ENST00000374255 PTBP3-006 protein_coding Homo_sapiens 0.000000000000002 90
ENST00000374257 PTBP3-004 protein_coding Homo_sapiens 0.000000000000004 90
ENST00000394601 PTBP1-002 protein_coding Homo_sapiens 0 300
ENST00000458258 PTBP3-202 protein_coding Homo_sapiens 0.000000000000004 90
ENST00000585956 PTBP1-016 protein_coding Homo_sapiens 0 250
ENST00000586944 PTBP1-004 retained_intron Homo_sapiens 0 300
ENST00000587136 PTBP1-008 retained_intron Homo_sapiens 0.0000000000006 79
ENST00000589575 PTBP1-006 protein_coding Homo_sapiens 5e-40 169
ENST00000592113 PTBP1-018 retained_intron Homo_sapiens 0 246
ENST00000621737 PTBP1-015 nonsense_mediated_decay Homo_sapiens 0 246

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