C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: talin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030187 Tln1-001 ENSMUSG00000028465 10090 - 4:43531519-43562422 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030187
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030187 49.602±8.73 88.311±24.81 41.207±4.20 10.989±0.87 66.377±14.09 47.410±8.57 22.732±2.93 36.875±10.09 15.711±7.36 96.162±16.84 7.869±2.42 81.182±32.85 52.568±26.06 7.621±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BX CIL_0007BX_0002 CGP 4:43514711-43562691
CIL_0007C0 CIL_0007C0_0002 CGP 4:43531519-43567060

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001726 ISS ruffle
GO:0003779 IEA actin binding
GO:0005158 IEA insulin receptor binding
GO:0005178 IEA integrin binding
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005815 IEA microtubule organizing center
GO:0005886 IEA plasma membrane
GO:0005925 IDA:ISS focal adhesion
GO:0007016 IEA cytoskeletal anchoring at plasma membrane
GO:0007044 IMP cell-substrate junction assembly
GO:0007155 IEA cell adhesion
GO:0015629 IEA actin cytoskeleton
GO:0017166 IEA vinculin binding
GO:0030274 IEA LIM domain binding
GO:0030866 IMP cortical actin cytoskeleton organization
GO:0032403 IEA protein complex binding
GO:0070062 IEA extracellular vesicular exosome
GO:0070527 IEA platelet aggregation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000078135 tln1-001 protein_coding Danio_rerio 0 3901
ENSDART00000013609 tln1-201 protein_coding Danio_rerio 0 3862
ENST00000306829 TLN2-201 protein_coding Homo_sapiens 0 1184
ENST00000314888 TLN1-001 protein_coding Homo_sapiens 0 10910
ENST00000378192 TLN1-002 retained_intron Homo_sapiens 0 1142
ENST00000464379 TLN1-005 processed_transcript Homo_sapiens 0 953
ENST00000465002 TLN1-007 retained_intron Homo_sapiens 7e-27 124
ENST00000466916 TLN1-008 retained_intron Homo_sapiens 0 547
ENST00000486788 TLN1-006 retained_intron Homo_sapiens 0 510
ENST00000489129 TLN2-002 retained_intron Homo_sapiens 0 1024
ENST00000489255 TLN1-003 processed_transcript Homo_sapiens 0 806
ENST00000494733 TLN2-004 protein_coding Homo_sapiens 0 1101
ENST00000495712 TLN1-004 processed_transcript Homo_sapiens 0 407
ENST00000561311 TLN2-001 protein_coding Homo_sapiens 0 1184

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