| Transcript ID | Kidney | Liver | Ovary |
|---|---|---|---|
| ENSMUST00000030393 | 1.729±0.43 | 1.489±0.00 | 9.605±2.58 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | leprecan 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000030393  |
Lepre1-012 |
ENSMUSG00000028641 |
10090 | + |
4:119232939-119248975  |
protein_coding |
Expression Patterns
|
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008N2 | CIL_0008N2_0002 | VISTA | 4:118719151-119320076 |
| CIL_0008PM | CIL_0008PM_0002 | VISTA | 4:118938785-119540197 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005506 | IEA | iron ion binding |
| GO:0005634 | IDA | nucleus |
| GO:0005737 | IDA | cytoplasm |
| GO:0005783 | ISO | endoplasmic reticulum |
| GO:0005886 | TAS | plasma membrane |
| GO:0016049 | IDA | cell growth |
| GO:0019511 | ISO | peptidyl-proline hydroxylation |
| GO:0019797 | ISO | procollagen-proline 3-dioxygenase activity |
| GO:0030199 | IMP | collagen fibril organization |
| GO:0030278 | IMP | regulation of ossification |
| GO:0031418 | IEA | L-ascorbic acid binding |
| GO:0032963 | ISO | collagen metabolic process |
| GO:0055114 | IEA | oxidation-reduction process |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000236040
|
LEPRE1-002 | protein_coding | Homo_sapiens | 0 | 2296 |
|
ENST00000296388
|
LEPRE1-001 | protein_coding | Homo_sapiens | 0 | 2553 |
|
ENST00000372526
|
LEPRE1-012 | protein_coding | Homo_sapiens | 0 | 355 |
|
ENST00000397054
|
LEPRE1-201 | protein_coding | Homo_sapiens | 0 | 2488 |
|
ENST00000431412
|
LEPRE1-008 | nonsense_mediated_decay | Homo_sapiens | 0 | 446 |
|
ENST00000447502
|
LEPRE1-011 | protein_coding | Homo_sapiens | 0 | 444 |
|
ENST00000460031
|
LEPRE1-009 | retained_intron | Homo_sapiens | 0 | 1328 |
|
ENST00000462474
|
LEPRE1-007 | processed_transcript | Homo_sapiens | 0 | 433 |
|
ENST00000463465
|
LEPRE1-010 | retained_intron | Homo_sapiens | 0 | 761 |
|
ENST00000472802
|
LEPRE1-006 | retained_intron | Homo_sapiens | 0 | 327 |
|
ENST00000481465
|
LEPRE1-013 | retained_intron | Homo_sapiens | 0 | 564 |
|
ENST00000492956
|
LEPRE1-003 | retained_intron | Homo_sapiens | 0 | 555 |
|
ENST00000495874
|
LEPRE1-004 | retained_intron | Homo_sapiens | 0 | 1323 |
