C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine proline-enriched proteoglycan (leprecan) 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000460031 LEPRE1-009 ENSG00000117385 9606 - 1:42746374-42766989 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungMuscleOvaryTestisENST00000460031
Transcript ID Adrenal Breast Colon Kidney Liver Lung Muscle Ovary Testis
ENST00000460031 5.746±0.00 2.300±0.00 0.932±0.52 2.022±0.00 0.890±0.00 4.594±0.00 1.519±0.00 2.767±2.00 5.270±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PM CIL_0008PM_0001 VISTA 1:42456139-43057783
CIL_0005B1 CIL_0005B1_0002 CGP 1:42733093-42767084
CIL_0005B2 CIL_0005B2_0002 CGP 1:42746335-42794493

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000136278 Lepre1-004 nonsense_mediated_decay Mus_musculus 0 1487
ENSMUST00000102662 Lepre1-003 protein_coding Mus_musculus 0 1332
ENSMUST00000153940 Lepre1-002 processed_transcript Mus_musculus 0 1332
ENSMUST00000121111 Lepre1-001 protein_coding Mus_musculus 0 1332
ENSMUST00000030393 Lepre1-012 protein_coding Mus_musculus 0 1328
ENSMUST00000081606 Lepre1-007 protein_coding Mus_musculus 0 1312
ENSMUST00000131875 Lepre1-005 processed_transcript Mus_musculus 0 767
ENSMUST00000127087 Lepre1-009 retained_intron Mus_musculus 0 477
ENSMUST00000126056 Lepre1-006 processed_transcript Mus_musculus 0 401
ENSMUST00000123963 Lepre1-011 processed_transcript Mus_musculus 0 324
ENSMUST00000142361 Lepre1-010 processed_transcript Mus_musculus 3.00018e-42 178

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