C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stathmin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030636 Stmn1-001 ENSMUSG00000028832 10090 + 4:134468320-134473843 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030636
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030636 2.232±0.93 1.214±0.73 37.881±5.20 525.752±142.44 0.681±0.37 2.765±2.01 0.987±0.16 3.620±2.76 36.630±43.28 9.596±5.43 2.029±0.69 27.238±47.89 78.894±23.64 60.758±15.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HZ CIL_0008HZ_0002 VISTA 4:134170100-134773977

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0005874 IEA microtubule
GO:0007019 IEA microtubule depolymerization
GO:0007052 IEA mitotic spindle organization
GO:0007409 IMP axonogenesis
GO:0007420 IEA brain development
GO:0009615 IEA response to virus
GO:0015631 IEA tubulin binding
GO:0016020 IDA membrane
GO:0031115 IDA negative regulation of microtubule polymerization
GO:0051272 IGI positive regulation of cellular component movement
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000041007 stmn1b-001 protein_coding Danio_rerio 0 235
ENST00000220876 STMN2-001 protein_coding Homo_sapiens 2e-38 165
ENST00000357865 STMN1-003 protein_coding Homo_sapiens 0 1027
ENST00000374291 STMN1-005 protein_coding Homo_sapiens 0 887
ENST00000399728 STMN1-201 protein_coding Homo_sapiens 0 1094
ENST00000426559 STMN1-008 protein_coding Homo_sapiens 0 628
ENST00000446334 STMN1-004 protein_coding Homo_sapiens 0 383
ENST00000455785 STMN1-001 protein_coding Homo_sapiens 0 1208
ENST00000465604 STMN1-002 processed_transcript Homo_sapiens 0 752
ENST00000485226 STMN1-007 processed_transcript Homo_sapiens 0 455
ENST00000518111 STMN2-008 protein_coding Homo_sapiens 6e-39 165
ENST00000518491 STMN2-007 protein_coding Homo_sapiens 5e-39 165

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