C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031456 Pde6b-001 ENSMUSG00000029491 10090 + 5:108388391-108431743 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverLungMuscleOvaryPlacentaTestisENSMUST00000031456
Transcript ID Brain Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031456 0.071±0.00 0.009±0.00 0.018±0.00 0.016±0.00 0.074±0.01 0.020±0.00 0.013±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070Z CIL_00070Z_0003 CGP 5:108388391-108434448

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 TAS plasma membrane
GO:0007165 IEA signal transduction
GO:0007601 IEA visual perception
GO:0009583 IMP detection of light stimulus
GO:0046037 IEA GMP metabolic process
GO:0046872 IEA metal ion binding
GO:0047555 IEA 3',5'-cyclic-GMP phosphodiesterase activity
GO:0051480 IEA cytosolic calcium ion homeostasis
GO:0060041 IMP retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000000392 pde6a-001 protein_coding Danio_rerio 0 1040
ENST00000255622 PDE6B-001 protein_coding Homo_sapiens 0 2667
ENST00000429163 PDE6B-003 protein_coding Homo_sapiens 0 2006
ENST00000465426 PDE6B-007 protein_coding Homo_sapiens 0 303
ENST00000467152 PDE6B-004 retained_intron Homo_sapiens 0 259
ENST00000474251 PDE6B-005 retained_intron Homo_sapiens 0 259
ENST00000476034 PDE6B-009 retained_intron Homo_sapiens 0 259
ENST00000487902 PDE6B-006 protein_coding Homo_sapiens 0 418
ENST00000488061 PDE6B-008 protein_coding Homo_sapiens 5.99756e-43 178
ENST00000496514 PDE6B-002 protein_coding Homo_sapiens 0 2682

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