Institute of Cardiovascular Regeneration Webtool Repository

Warning (512): _cake_core_ cache was unable to write 'cake_dev_eng' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'cake_dev_eng'
$value = array(
	'LC_MESSAGES' => array()
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
I18n::translate() - CORE/Cake/I18n/I18n.php, line 237
__d - CORE/Cake/basics.php, line 617
Cache::write() - CORE/Cake/Cache/Cache.php, line 321
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = null
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = array(
	(int) 0 => 'conserved_region_elements',
	(int) 1 => 'conserved_regions',
	(int) 2 => 'diffexp',
	(int) 3 => 'experiment',
	(int) 4 => 'expressed_transcripts',
	(int) 5 => 'external_accessions',
	(int) 6 => 'genes',
	(int) 7 => 'go_annotations',
	(int) 8 => 'homologues',
	(int) 9 => 'maptranscripttoregion',
	(int) 10 => 'organism',
	(int) 11 => 'sample',
	(int) 12 => 'study',
	(int) 13 => 'synonyms',
	(int) 14 => 'transcripts'
)
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 236
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Region Summary

CIL_00070Z_0001 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSDARG00000011671-ENSDARG00000078113	CGP	7955	21:19184333-19209356
Gene	Transcript	Position	Biotype
ENSDARG00000011671 (pde6b) phosphodiesterase 6B, cGMP-specific, rod, beta	ENSDART00000135816 (pde6b-001)	19184333-19204482	protein_coding
ENSDARG00000078113 (atp5ia) ATP synthase, H+ transporting, mitochondrial F0 complex, subunit e, duplicate a	ENSDART00000115236 (atp5ia-001)	19205627-19209356	protein_coding

CIL_00070Z_0002 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSG00000133256-ENSG00000169020	CGP	9606	4:625584-674338
Gene	Transcript	Position	Biotype
ENSG00000133256 (PDE6B) phosphodiesterase 6B, cGMP-specific, rod, beta	ENST00000255622 (PDE6B-001)	625584-670782	protein_coding
	ENST00000429163 (PDE6B-003)	653180-670233	protein_coding
	ENST00000460119 (PDE6B-010)	663723-664922	retained_intron
	ENST00000461490 (PDE6B-012)	664910-670314	protein_coding
	ENST00000465426 (PDE6B-007)	651559-654858	protein_coding
	ENST00000467152 (PDE6B-004)	653211-654374	retained_intron
	ENST00000471824 (PDE6B-011)	663770-670193	protein_coding
	ENST00000474251 (PDE6B-005)	651985-654288	retained_intron
	ENST00000476034 (PDE6B-009)	652273-654669	retained_intron
	ENST00000487902 (PDE6B-006)	651985-656943	protein_coding
	ENST00000488061 (PDE6B-008)	653177-654084	protein_coding
	ENST00000496514 (PDE6B-002)	625606-670753	protein_coding
ENSG00000169020 (ATP5I) ATP synthase, H+ transporting, mitochondrial Fo complex, subunit E	ENST00000304312 (ATP5I-001)	672436-674338	protein_coding
	ENST00000505852 (ATP5I-002)	672438-674330	processed_transcript
	ENST00000506525 (ATP5I-003)	672438-673821	processed_transcript
	ENST00000515116 (ATP5I-005)	672494-673523	retained_intron
	ENST00000515202 (ATP5I-004)	672436-674121	retained_intron
ENSG00000215375 (MYL5) myosin, light chain 5, regulatory	ENST00000400159 (MYL5-001)	677922-682033	protein_coding
	ENST00000502720 (MYL5-005)	674542-676481	retained_intron
	ENST00000503300 (MYL5-003)	674503-682027	nonsense_mediated_decay
	ENST00000503612 (MYL5-006)	680746-682028	retained_intron
	ENST00000505477 (MYL5-009)	673941-682022	protein_coding
	ENST00000506838 (MYL5-002)	673580-682027	protein_coding
	ENST00000507804 (MYL5-008)	678189-680579	protein_coding
	ENST00000511290 (MYL5-004)	674560-682028	protein_coding
	ENST00000513662 (MYL5-007)	677954-681990	nonsense_mediated_decay
ENSG00000272927 (RP11-1191J2.5)	ENST00000609172 (RP11-1191J2.5-001)	661209-661945	antisense

CIL_00070Z_0003 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000029491-ENSMUSG00000050856	CGP	10090	5:108388391-108434448
Gene	Transcript	Position	Biotype
ENSMUSG00000029491 (Pde6b) phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide	ENSMUST00000031456 (Pde6b-001)	108388391-108431743	protein_coding
	ENSMUST00000130448 (Pde6b-003)	108430377-108432397	retained_intron
	ENSMUST00000134865 (Pde6b-002)	108388426-108431667	retained_intron
ENSMUSG00000050856 (Atp5k) ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E	ENSMUST00000049628 (Atp5k-001)	108433244-108434448	protein_coding
	ENSMUST00000118632 (Atp5k-002)	108433244-108434448	protein_coding
	ENSMUST00000123184 (Atp5k-003)	108433246-108434397	retained_intron

Expression Patterns

Heat Map

Heat Map (Expressed Only)

Numeric Values

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSDARG00000011671

ENSDART00000135816

N/A

0.161±0.11

N/A

0.165±0.08

0.656±0.32

N/A

0.014±0.00

N/A

ENSDARG00000078113

ENSDART00000115236

N/A

92.036±33.76

N/A

75.600±69.18

9.325±8.88

14.377±0.00

N/A

55.040±0.00

N/A

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSG00000133256

ENST00000255622

N/A

1.592±0.00

N/A

0.026±0.00

N/A

0.306±0.00

ENST00000429163

N/A

4.767±0.00

0.210±0.00

N/A

0.259±0.17

N/A

0.443±0.30

0.136±0.00

N/A

ENST00000460119

N/A

0.829±0.00

N/A

0.121±0.00

3.303±2.56

1.938±1.37

N/A

ENST00000461490

N/A

0.712±0.00

N/A

0.179±0.00

1.379±0.00

1.091±0.00

1.705±0.00

0.149±0.00

3.861±0.00

1.103±0.69

9.614±0.00

ENST00000465426

N/A

ENST00000467152

N/A

ENST00000471824

N/A

3.178±0.00

0.244±0.00

N/A

0.715±0.00

0.087±0.00

N/A

0.961±0.00

N/A

1.078±0.00

1.353±0.15

N/A

N/A

N/A

N/A

N/A

N/A

0.652±0.00

N/A

0.105±0.00

0.112±0.00

N/A

0.007±0.00

N/A

ENSG00000169020

ENST00000304312

123.483±0.00

138.463±0.00

26.562±0.00

115.365±22.43

92.623±56.96

153.202±99.67

226.687±116.91

134.751±71.05

115.658±72.86

93.897±79.37

139.118±1.08

142.636±108.99

208.266±91.60

110.296±70.22

N/A

N/A

N/A

N/A

ENSG00000215375

ENST00000400159

N/A

14.202±0.00

N/A

N/A

N/A

N/A

2.324±0.00

N/A

ENST00000506838

N/A

8.585±0.00

N/A

5.498±0.00

N/A

ENST00000507804

N/A

ENST00000511290

N/A

ENST00000513662

N/A

ENSG00000272927

ENST00000609172

N/A

1.711±0.00

N/A

1.168±0.88

0.202±0.00

0.360±0.00

0.158±0.00

0.226±0.00

N/A

0.676±0.21

N/A

0.623±0.47

0.118±0.06

0.952±0.63

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSMUSG00000029491

ENSMUST00000031456

N/A

0.071±0.00

N/A

0.009±0.00

0.018±0.00

0.016±0.00

0.074±0.01

0.020±0.00

0.013±0.00

ENSMUST00000130448

0.162±0.00

0.126±0.01

0.019±0.01

0.057±0.03

0.087±0.05

0.208±0.08

0.122±0.05

0.141±0.06

0.048±0.02

0.090±0.03

0.039±0.00

0.338±0.19

0.031±0.00

0.051±0.02

ENSMUST00000134865

0.028±0.02

0.068±0.03

0.003±0.00

0.005±0.00

0.038±0.02

0.046±0.03

0.009±0.00

0.027±0.01

0.016±0.01

0.028±0.02

0.013±0.00

0.071±0.04

0.012±0.01

0.016±0.01

ENSMUSG00000050856

ENSMUST00000049628

32.682±13.31

3.932±1.13

123.480±12.91

220.214±247.67

11.045±5.20

17.513±4.85

110.701±10.80

53.962±14.58

53.333±31.64

9.720±2.78

669.336±97.65

88.496±158.62

304.948±218.18

84.649±129.14

ENSMUST00000118632

N/A

ENSMUST00000123184

2.422±0.53

4.174±0.47

N/A

2.531±0.00

3.125±1.22

5.702±0.47

14.110±4.88

3.529±0.57

3.289±1.09

1.762±0.25

N/A

2.381±0.87

N/A

1.049±0.08

Warning (512): _cake_core_ cache was unable to write 'file_map' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'file_map'
$value = array(
	'Configure' => '/var/www/c-it-loci/lib/Cake/Core/Configure.php',
	'Hash' => '/var/www/c-it-loci/lib/Cake/Utility/Hash.php',
	'Cache' => '/var/www/c-it-loci/lib/Cake/Cache/Cache.php',
	'FileEngine' => '/var/www/c-it-loci/lib/Cake/Cache/Engine/FileEngine.php',
	'CacheEngine' => '/var/www/c-it-loci/lib/Cake/Cache/CacheEngine.php',
	'Inflector' => '/var/www/c-it-loci/lib/Cake/Utility/Inflector.php',
	'ErrorHandler' => '/var/www/c-it-loci/lib/Cake/Error/ErrorHandler.php',
	'CakePlugin' => '/var/www/c-it-loci/lib/Cake/Core/CakePlugin.php',
	'CakeLog' => '/var/www/c-it-loci/lib/Cake/Log/CakeLog.php',
	'LogEngineCollection' => '/var/www/c-it-loci/lib/Cake/Log/LogEngineCollection.php',
	'ObjectCollection' => '/var/www/c-it-loci/lib/Cake/Utility/ObjectCollection.php',
	'FileLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/FileLog.php',
	'BaseLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/BaseLog.php',
	'CakeLogInterface' => '/var/www/c-it-loci/lib/Cake/Log/CakeLogInterface.php',
	'Debugger' => '/var/www/c-it-loci/lib/Cake/Utility/Debugger.php',
	'String' => '/var/www/c-it-loci/lib/Cake/Utility/String.php',
	'Dispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Dispatcher.php',
	'CakeEventListener' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventListener.php',
	'CakeRequest' => '/var/www/c-it-loci/lib/Cake/Network/CakeRequest.php',
	'CakeResponse' => '/var/www/c-it-loci/lib/Cake/Network/CakeResponse.php',
	'CakeEvent' => '/var/www/c-it-loci/lib/Cake/Event/CakeEvent.php',
	'CakeEventManager' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventManager.php',
	'AssetDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/AssetDispatcher.php',
	'DispatcherFilter' => '/var/www/c-it-loci/lib/Cake/Routing/DispatcherFilter.php',
	'CacheDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/CacheDispatcher.php',
	'Router' => '/var/www/c-it-loci/lib/Cake/Routing/Router.php',
	'CakeRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/CakeRoute.php',
	'PluginShortRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/PluginShortRoute.php',
	'RegionController' => '/var/www/c-it-loci/app/Controller/RegionController.php',
	'AppController' => '/var/www/c-it-loci/app/Controller/AppController.php',
	'Controller' => '/var/www/c-it-loci/lib/Cake/Controller/Controller.php',
	'Object' => '/var/www/c-it-loci/lib/Cake/Core/Object.php',
	'ComponentCollection' => '/var/www/c-it-loci/lib/Cake/Controller/ComponentCollection.php',
	'SessionComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/SessionComponent.php',
	'Component' => '/var/www/c-it-loci/lib/Cake/Controller/Component.php',
	'RequestHandlerComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/RequestHandlerComponent.php',
	'ClassRegistry' => '/var/www/c-it-loci/lib/Cake/Utility/ClassRegistry.php',
	'Region' => '/var/www/c-it-loci/app/Model/Region.php',
	'AppModel' => '/var/www/c-it-loci/app/Model/AppModel.php',
	'Model' => '/var/www/c-it-loci/lib/Cake/Model/Model.php',
	'BehaviorCollection' => '/var/www/c-it-loci/lib/Cake/Model/BehaviorCollection.php',
	'ConnectionManager' => '/var/www/c-it-loci/lib/Cake/Model/ConnectionManager.php',
	'Mysql' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/Database/Mysql.php',
	'DboSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DboSource.php',
	'DataSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DataSource.php',
	'I18n' => '/var/www/c-it-loci/lib/Cake/I18n/I18n.php',
	'L10n' => '/var/www/c-it-loci/lib/Cake/I18n/L10n.php',
	'CakeSession' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/CakeSession.php',
	'View' => '/var/www/c-it-loci/lib/Cake/View/View.php',
	'HelperCollection' => '/var/www/c-it-loci/lib/Cake/View/HelperCollection.php',
	'ViewBlock' => '/var/www/c-it-loci/lib/Cake/View/ViewBlock.php',
	'HtmlHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/HtmlHelper.php',
	'AppHelper' => '/var/www/c-it-loci/app/View/Helper/AppHelper.php',
	'Helper' => '/var/www/c-it-loci/lib/Cake/View/Helper.php',
	'FormHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/FormHelper.php',
	'SessionHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/SessionHelper.php'
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
App::shutdown() - CORE/Cake/Core/App.php, line 899
[main] - [internal], line ??

Warning (512): _cake_core_ cache was unable to write 'method_cache' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'method_cache'
$value = array(
	(int) 0 => false,
	'name' => array(
		'45b989c52610ac6d773f6b83d6108190' => '`citloci`'
	)
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DboSource::__destruct() - CORE/Cake/Model/Datasource/DboSource.php, line 3539
[main] - [internal], line ??

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

Loading