C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphodiesterase 6B, cGMP-specific, rod, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000496514 PDE6B-002 ENSG00000133256 9606 + 4:625606-670753 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLiverMuscleENST00000496514
Transcript ID Brain Kidney Liver Muscle
ENST00000496514 0.652±0.00 0.105±0.00 0.112±0.00 0.007±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070Z CIL_00070Z_0002 CGP 4:625584-674338

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004114 IEA 3',5'-cyclic-nucleotide phosphodiesterase activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0007165 IEA signal transduction
GO:0007601 IEA visual perception
GO:0007603 TAS phototransduction, visible light
GO:0008152 IEA metabolic process
GO:0009583 IEA detection of light stimulus
GO:0016056 TAS rhodopsin mediated signaling pathway
GO:0022400 TAS regulation of rhodopsin mediated signaling pathway
GO:0046037 IMP GMP metabolic process
GO:0046872 IEA metal ion binding
GO:0047555 IMP 3',5'-cyclic-GMP phosphodiesterase activity
GO:0051480 IMP cytosolic calcium ion homeostasis
GO:0060041 IEA retina development in camera-type eye
GO:0097381 TAS photoreceptor disc membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031456 Pde6b-001 protein_coding Mus_musculus 0 2682
ENSMUST00000134865 Pde6b-002 retained_intron Mus_musculus 0 1437
ENSMUST00000025956 Pde6c-201 protein_coding Mus_musculus 0 324
ENSMUST00000112329 Pde6c-202 protein_coding Mus_musculus 0 215

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