C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031651 Pan3-001 ENSMUSG00000029647 10090 + 5:147430161-147548502 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031651
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031651 3.051±0.92 4.436±0.25 3.721±0.09 2.937±0.81 2.352±0.30 0.872±0.16 4.371±0.41 2.780±0.91 3.856±0.74 0.518±0.00 1.530±0.00 3.444±1.29 4.684±0.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CO CIL_0008CO_0002 VISTA 5:146855041-147456530
CIL_00082E CIL_00082E_0002 VISTA 5:146922660-147524221
CIL_0007MT CIL_0007MT_0002 UCNEbase 5:146994099-147547626
CIL_0000G0 CIL_0000G0_0003 CGP 5:147330741-147548502
CIL_0000G1 CIL_0000G1_0003 CGP 5:147430161-147726011

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000290 IMP deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0004535 IEA poly(A)-specific ribonuclease activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0006397 IEA mRNA processing
GO:0006605 IDA protein targeting
GO:0010606 IDA positive regulation of cytoplasmic mRNA processing body assembly
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0031251 ISS PAN complex
GO:0046872 IEA metal ion binding
GO:0090503 IEA RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380958 PAN3-002 protein_coding Homo_sapiens 0 2619
ENST00000399613 PAN3-001 protein_coding Homo_sapiens 0 3018
ENST00000503791 PAN3-004 retained_intron Homo_sapiens 0 1694

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