C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000G0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000058503-ENSDARG00000031637 CGP 7955 24:22299887-22356648
GeneTranscriptPositionBiotype
ENSDARG00000031637 (pan3)
PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae) 		ENSDART00000048273 (pan3-001) 22328269-22356648 protein_coding
ENSDART00000132364 (pan3-004) 22338039-22338823 retained_intron
ENSDART00000137952 (pan3-003) 22328428-22356648 processed_transcript
ENSDART00000147250 (pan3-002) 22328252-22332942 protein_coding
ENSDARG00000058503 (flt3)
fms-related tyrosine kinase 3 		ENSDART00000081357 (flt3-001) 22299887-22321831 protein_coding
CIL_0000G0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000122025-ENSG00000152520 CGP 9606 13:28003274-28295335
GeneTranscriptPositionBiotype
ENSG00000122025 (FLT3)
fms-related tyrosine kinase 3 		ENST00000241453 (FLT3-001) 28003274-28100592 protein_coding
ENST00000380987 (FLT3-002) 28003614-28100592 nonsense_mediated_decay
ENST00000469894 (FLT3-003) 28003947-28014512 processed_transcript
ENSG00000152520 (PAN3)
PAN3 poly(A) specific ribonuclease subunit 		ENST00000380958 (PAN3-002) 28138506-28292539 protein_coding
ENST00000399613 (PAN3-001) 28139033-28295335 protein_coding
ENST00000483842 (PAN3-003) 28239557-28256539 processed_transcript
ENST00000503791 (PAN3-004) 28138506-28272313 retained_intron
ENSG00000200840 (RNU6-82P)
RNA, U6 small nuclear 82, pseudogene 		ENST00000363970 (RNU6-82P-201) 28232501-28232607 snRNA
ENSG00000232587 (EEF1A1P3)
eukaryotic translation elongation factor 1 alpha 1 pseudogene 3 		ENST00000417549 (EEF1A1P3-001) 28214513-28215897 processed_pseudogene
ENSG00000235115 (CHCHD2P8)
coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 8 		ENST00000429873 (CHCHD2P8-001) 28107431-28107877 processed_pseudogene
ENSG00000261485 (PAN3-AS1)
PAN3 antisense RNA 1 		ENST00000563843 (PAN3-AS1-001) 28136843-28138193 antisense
CIL_0000G0_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042817-ENSMUSG00000029647 CGP 10090 5:147330741-147548502
GeneTranscriptPositionBiotype
ENSMUSG00000029647 (Pan3)
PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae) 		ENSMUST00000031651 (Pan3-001) 147430161-147548502 protein_coding
ENSMUST00000175807 (Pan3-006) 147519687-147548496 protein_coding
ENSMUST00000176202 (Pan3-008) 147430896-147455336 retained_intron
ENSMUST00000176357 (Pan3-011) 147453258-147492524 processed_transcript
ENSMUST00000176466 (Pan3-009) 147430896-147527026 nonsense_mediated_decay
ENSMUST00000176505 (Pan3-007) 147529733-147548488 retained_intron
ENSMUST00000176553 (Pan3-017) 147539277-147548493 protein_coding
ENSMUST00000176596 (Pan3-005) 147453289-147548496 nonsense_mediated_decay
ENSMUST00000176600 (Pan3-002) 147430453-147548496 protein_coding
ENSMUST00000176753 (Pan3-003) 147450660-147545945 protein_coding
ENSMUST00000176806 (Pan3-013) 147529938-147531745 retained_intron
ENSMUST00000176817 (Pan3-014) 147530014-147533353 processed_transcript
ENSMUST00000176856 (Pan3-015) 147537216-147545680 processed_transcript
ENSMUST00000177327 (Pan3-010) 147450656-147488453 retained_intron
ENSMUST00000177328 (Pan3-012) 147519434-147527007 retained_intron
ENSMUST00000177465 (Pan3-004) 147450660-147545945 nonsense_mediated_decay
ENSMUST00000177496 (Pan3-016) 147536324-147543125 retained_intron
ENSMUSG00000042817 (Flt3)
FMS-like tyrosine kinase 3 		ENSMUST00000049324 (Flt3-001) 147330741-147400489 protein_coding
ENSMUST00000110549 (Flt3-002) 147362557-147400489 protein_coding
ENSMUST00000176456 (Flt3-003) 147330741-147400489 protein_coding
ENSMUSG00000057157 (Gm6054)
predicted gene 6054 		ENSMUST00000078052 (Gm6054-201) 147408982-147409359 processed_pseudogene
ENSMUSG00000097228 (Gm26597)
predicted gene, 26597 		ENSMUST00000181648 (Gm26597-201) 147399554-147401917 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000G0_0001ENSDARG00000031637ENSDART00000048273ENSDART00000132364ENSDART00000137952ENSDART00000147250ENSDARG00000058503ENSDART00000081357CIL_0000G0_0002ENSG00000122025ENST00000241453ENST00000380987ENST00000469894ENSG00000152520ENST00000380958ENST00000399613ENST00000483842ENST00000503791ENSG00000200840ENST00000363970ENSG00000232587ENST00000417549ENSG00000235115ENST00000429873ENSG00000261485ENST00000563843CIL_0000G0_0003ENSMUSG00000029647ENSMUST00000031651ENSMUST00000175807ENSMUST00000176202ENSMUST00000176357ENSMUST00000176466ENSMUST00000176505ENSMUST00000176553ENSMUST00000176596ENSMUST00000176600ENSMUST00000176753ENSMUST00000176806ENSMUST00000176817ENSMUST00000176856ENSMUST00000177327ENSMUST00000177328ENSMUST00000177465ENSMUST00000177496ENSMUSG00000042817ENSMUST00000049324ENSMUST00000110549ENSMUST00000176456ENSMUSG00000057157ENSMUST00000078052ENSMUSG00000097228ENSMUST00000181648
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000G0_0001ENSDARG00000031637ENSDART00000048273ENSDART00000137952ENSDART00000147250ENSDARG00000058503ENSDART00000081357CIL_0000G0_0002ENSG00000122025ENST00000241453ENST00000380987ENST00000469894ENSG00000152520ENST00000380958ENST00000399613ENSG00000200840ENST00000363970ENSG00000232587ENST00000417549ENSG00000235115ENST00000429873ENSG00000261485ENST00000563843CIL_0000G0_0003ENSMUSG00000029647ENSMUST00000031651ENSMUST00000175807ENSMUST00000176505ENSMUST00000176553ENSMUST00000176596ENSMUST00000176600ENSMUST00000176753ENSMUST00000176817ENSMUSG00000042817ENSMUST00000049324ENSMUST00000110549ENSMUST00000176456ENSMUSG00000057157ENSMUST00000078052ENSMUSG00000097228ENSMUST00000181648
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000031637 ENSDART00000048273 N/A N/A N/A 6.643±1.96 N/A N/A 1.498±1.17 5.557±0.00 0.916±0.00 N/A 3.233±0.00 N/A N/A N/A
ENSDART00000132364 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000137952 N/A N/A N/A N/A N/A N/A 2.133±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000147250 N/A N/A N/A N/A N/A N/A 0.581±0.09 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000058503 ENSDART00000081357 N/A N/A N/A 1.406±0.51 N/A N/A 0.381±0.37 0.562±0.27 N/A N/A 0.259±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000122025 ENST00000241453 0.073±0.00 0.453±0.00 N/A 0.250±0.00 N/A N/A 0.016±0.00 0.022±0.00 N/A 0.105±0.00 N/A 0.083±0.04 0.028±0.00 0.241±0.04
ENST00000380987 N/A N/A N/A 0.229±0.00 0.035±0.00 0.054±0.04 0.089±0.00 0.409±0.00 0.123±0.04 0.583±0.00 N/A 0.070±0.01 0.050±0.01 0.062±0.00
ENST00000469894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.082±0.00 N/A
ENSG00000152520 ENST00000380958 N/A N/A 1.122±0.00 N/A N/A 3.017±0.00 N/A N/A 6.417±0.00 3.295±0.00 0.541±0.00 N/A N/A N/A
ENST00000399613 3.861±0.00 3.183±0.00 1.722±0.00 0.401±0.00 2.110±0.35 2.705±0.89 0.807±0.55 2.556±0.00 0.396±0.00 1.144±0.47 1.029±0.71 6.211±4.38 1.321±0.79 8.589±1.48
ENST00000483842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000200840 ENST00000363970 N/A N/A N/A N/A N/A N/A 0.367±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000232587 ENST00000417549 0.591±0.00 0.617±0.00 0.320±0.00 0.327±0.00 1.363±0.86 1.180±0.73 0.178±0.00 0.433±0.00 0.311±0.25 0.403±0.13 0.238±0.09 1.194±0.86 0.143±0.11 0.319±0.02
ENSG00000235115 ENST00000429873 0.053±0.00 0.057±0.00 N/A N/A 0.063±0.00 N/A 0.108±0.00 N/A 0.105±0.00 0.058±0.00 0.050±0.00 0.140±0.00 N/A N/A
ENSG00000261485 ENST00000563843 0.604±0.00 0.591±0.00 0.409±0.00 1.317±0.00 0.397±0.14 0.493±0.04 0.222±0.00 0.370±0.29 0.170±0.15 0.503±0.11 0.240±0.00 1.409±0.91 0.559±0.16 1.863±0.74
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029647 ENSMUST00000031651 3.051±0.92 N/A 4.436±0.25 3.721±0.09 2.937±0.81 2.352±0.30 0.872±0.16 4.371±0.41 2.780±0.91 3.856±0.74 0.518±0.00 1.530±0.00 3.444±1.29 4.684±0.86
ENSMUST00000175807 N/A N/A N/A 0.734±0.00 N/A N/A N/A N/A 1.243±0.00 N/A 0.792±0.00 N/A 3.196±1.52 2.993±0.00
ENSMUST00000176202 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176505 N/A N/A N/A N/A N/A N/A N/A N/A 2.277±0.00 N/A N/A N/A N/A N/A
ENSMUST00000176553 N/A N/A N/A N/A 17.182±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176596 1.728±0.00 N/A N/A 1.554±0.63 4.296±2.05 2.450±0.00 1.501±0.61 2.210±0.20 1.775±0.87 2.687±0.00 0.380±0.01 3.925±1.00 2.136±0.53 9.330±3.06
ENSMUST00000176600 2.407±0.74 4.744±0.31 N/A 2.012±0.86 6.192±0.73 5.715±0.81 N/A N/A 1.917±1.22 3.572±0.00 0.265±0.00 6.828±1.75 1.520±0.28 5.041±0.51
ENSMUST00000176753 1.992±0.00 N/A N/A N/A 4.989±1.78 N/A 1.336±0.12 N/A 1.495±0.55 6.531±0.00 N/A 7.684±0.62 9.571±0.00 6.512±0.11
ENSMUST00000176806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176817 N/A N/A N/A 32.430±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 63.359±3.40 N/A
ENSMUST00000176856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177496 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000042817 ENSMUST00000049324 0.521±0.35 0.062±0.02 0.675±0.23 0.303±0.26 1.861±0.83 0.273±0.06 0.045±0.02 0.246±0.12 0.436±0.38 1.010±0.34 0.272±0.00 0.260±0.14 5.424±7.52 0.379±0.16
ENSMUST00000110549 N/A 0.111±0.03 N/A 0.053±0.01 0.230±0.08 0.052±0.01 0.008±0.00 0.020±0.00 N/A 0.089±0.00 N/A 0.114±0.06 N/A N/A
ENSMUST00000176456 0.035±0.00 0.035±0.01 0.069±0.00 0.147±0.06 0.319±0.16 0.108±0.02 0.021±0.01 0.033±0.00 0.143±0.12 0.152±0.02 0.076±0.05 0.194±0.09 0.753±1.14 0.086±0.00
ENSMUSG00000057157 ENSMUST00000078052 N/A N/A 0.055±0.02 0.089±0.01 0.417±0.00 0.477±0.00 0.492±0.34 0.148±0.01 0.221±0.14 0.322±0.00 0.210±0.03 0.572±0.07 1.056±0.89 0.282±0.12
ENSMUSG00000097228 ENSMUST00000181648 N/A N/A 0.011±0.00 0.104±0.04 0.066±0.02 N/A N/A N/A 0.012±0.01 0.044±0.00 N/A N/A 0.051±0.04 0.014±0.00

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