C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000G1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000031637-ENSDARG00000019371 CGP 7955 24:22328252-22416767
GeneTranscriptPositionBiotype
ENSDARG00000019371 (flt1)
fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor) 		ENSDART00000025621 (flt1-001) 22358758-22416764 protein_coding
ENSDART00000130446 (flt1-002) 22388496-22416767 protein_coding
ENSDARG00000031637 (pan3)
PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae) 		ENSDART00000048273 (pan3-001) 22328269-22356648 protein_coding
ENSDART00000132364 (pan3-004) 22338039-22338823 retained_intron
ENSDART00000137952 (pan3-003) 22328428-22356648 processed_transcript
ENSDART00000147250 (pan3-002) 22328252-22332942 protein_coding
CIL_0000G1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000152520-ENSG00000102755 CGP 9606 13:28138506-28495128
GeneTranscriptPositionBiotype
ENSG00000102755 (FLT1)
fms-related tyrosine kinase 1 		ENST00000282397 (FLT1-001) 28300344-28495095 protein_coding
ENST00000539099 (FLT1-201) 28399044-28495128 protein_coding
ENST00000540678 (FLT1-202) 28303144-28346289 protein_coding
ENST00000541932 (FLT1-003) 28368096-28495128 protein_coding
ENST00000543394 (FLT1-203) 28303134-28322633 protein_coding
ENST00000615611 (FLT1-204) 28303126-28328415 protein_coding
ENST00000615840 (FLT1-002) 28385548-28495079 protein_coding
ENST00000617835 (FLT1-205) 28303126-28308434 protein_coding
ENSG00000152520 (PAN3)
PAN3 poly(A) specific ribonuclease subunit 		ENST00000380958 (PAN3-002) 28138506-28292539 protein_coding
ENST00000399613 (PAN3-001) 28139033-28295335 protein_coding
ENST00000483842 (PAN3-003) 28239557-28256539 processed_transcript
ENST00000503791 (PAN3-004) 28138506-28272313 retained_intron
ENSG00000200840 (RNU6-82P)
RNA, U6 small nuclear 82, pseudogene 		ENST00000363970 (RNU6-82P-201) 28232501-28232607 snRNA
ENSG00000232587 (EEF1A1P3)
eukaryotic translation elongation factor 1 alpha 1 pseudogene 3 		ENST00000417549 (EEF1A1P3-001) 28214513-28215897 processed_pseudogene
CIL_0000G1_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029647-ENSMUSG00000029648 CGP 10090 5:147430161-147726011
GeneTranscriptPositionBiotype
ENSMUSG00000029647 (Pan3)
PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae) 		ENSMUST00000031651 (Pan3-001) 147430161-147548502 protein_coding
ENSMUST00000175807 (Pan3-006) 147519687-147548496 protein_coding
ENSMUST00000176202 (Pan3-008) 147430896-147455336 retained_intron
ENSMUST00000176357 (Pan3-011) 147453258-147492524 processed_transcript
ENSMUST00000176466 (Pan3-009) 147430896-147527026 nonsense_mediated_decay
ENSMUST00000176505 (Pan3-007) 147529733-147548488 retained_intron
ENSMUST00000176553 (Pan3-017) 147539277-147548493 protein_coding
ENSMUST00000176596 (Pan3-005) 147453289-147548496 nonsense_mediated_decay
ENSMUST00000176600 (Pan3-002) 147430453-147548496 protein_coding
ENSMUST00000176753 (Pan3-003) 147450660-147545945 protein_coding
ENSMUST00000176806 (Pan3-013) 147529938-147531745 retained_intron
ENSMUST00000176817 (Pan3-014) 147530014-147533353 processed_transcript
ENSMUST00000176856 (Pan3-015) 147537216-147545680 processed_transcript
ENSMUST00000177327 (Pan3-010) 147450656-147488453 retained_intron
ENSMUST00000177328 (Pan3-012) 147519434-147527007 retained_intron
ENSMUST00000177465 (Pan3-004) 147450660-147545945 nonsense_mediated_decay
ENSMUST00000177496 (Pan3-016) 147536324-147543125 retained_intron
ENSMUSG00000029648 (Flt1)
FMS-like tyrosine kinase 1 		ENSMUST00000031652 (Flt1-003) 147654269-147725988 protein_coding
ENSMUST00000031653 (Flt1-001) 147561604-147726011 protein_coding
ENSMUST00000110529 (Flt1-002) 147635159-147725988 protein_coding
ENSMUST00000125272 (Flt1-005) 147604660-147634418 processed_transcript
ENSMUST00000142477 (Flt1-004) 147614756-147615242 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000G1_0001ENSDARG00000019371ENSDART00000025621ENSDART00000130446ENSDARG00000031637ENSDART00000048273ENSDART00000132364ENSDART00000137952ENSDART00000147250CIL_0000G1_0002ENSG00000102755ENST00000282397ENST00000539099ENST00000540678ENST00000541932ENST00000543394ENST00000615611ENST00000615840ENST00000617835ENSG00000152520ENST00000380958ENST00000399613ENST00000483842ENST00000503791ENSG00000200840ENST00000363970ENSG00000232587ENST00000417549CIL_0000G1_0003ENSMUSG00000029647ENSMUST00000031651ENSMUST00000175807ENSMUST00000176202ENSMUST00000176357ENSMUST00000176466ENSMUST00000176505ENSMUST00000176553ENSMUST00000176596ENSMUST00000176600ENSMUST00000176753ENSMUST00000176806ENSMUST00000176817ENSMUST00000176856ENSMUST00000177327ENSMUST00000177328ENSMUST00000177465ENSMUST00000177496ENSMUSG00000029648ENSMUST00000031652ENSMUST00000031653ENSMUST00000110529ENSMUST00000125272ENSMUST00000142477
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000G1_0001ENSDARG00000019371ENSDART00000025621ENSDART00000130446ENSDARG00000031637ENSDART00000048273ENSDART00000137952ENSDART00000147250CIL_0000G1_0002ENSG00000102755ENST00000282397ENST00000541932ENST00000615840ENSG00000152520ENST00000380958ENST00000399613ENSG00000200840ENST00000363970ENSG00000232587ENST00000417549CIL_0000G1_0003ENSMUSG00000029647ENSMUST00000031651ENSMUST00000175807ENSMUST00000176505ENSMUST00000176553ENSMUST00000176596ENSMUST00000176600ENSMUST00000176753ENSMUST00000176817ENSMUSG00000029648ENSMUST00000031652ENSMUST00000031653ENSMUST00000110529
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000019371 ENSDART00000025621 N/A N/A N/A 2.025±1.04 N/A N/A 2.553±0.92 0.382±0.00 0.293±0.00 N/A 1.333±0.00 N/A N/A N/A
ENSDART00000130446 N/A N/A N/A 6.551±1.43 N/A N/A 13.786±6.50 1.177±1.12 0.943±0.00 N/A 9.930±0.00 N/A N/A N/A
ENSDARG00000031637 ENSDART00000048273 N/A N/A N/A 6.643±1.96 N/A N/A 1.498±1.17 5.557±0.00 0.916±0.00 N/A 3.233±0.00 N/A N/A N/A
ENSDART00000132364 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000137952 N/A N/A N/A N/A N/A N/A 2.133±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000147250 N/A N/A N/A N/A N/A N/A 0.581±0.09 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000102755 ENST00000282397 17.613±0.00 3.603±0.00 5.030±0.00 2.663±1.21 4.395±0.24 8.827±6.78 6.430±3.21 2.989±1.60 2.146±0.18 9.380±3.33 1.270±0.79 2.064±0.58 N/A 1.677±1.00
ENST00000539099 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540678 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541932 N/A N/A 2.601±0.00 N/A 2.947±0.00 N/A 4.899±0.00 2.717±0.00 2.449±0.00 5.798±0.00 N/A 3.834±0.00 337.504±159.00 1.797±0.00
ENST00000543394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615840 27.339±0.00 4.819±0.00 N/A 4.196±3.27 3.055±0.17 16.836±16.17 4.298±2.21 2.725±2.23 2.038±0.03 16.042±10.19 5.327±0.00 2.614±0.77 86.349±34.17 1.850±1.15
ENST00000617835 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000152520 ENST00000380958 N/A N/A 1.122±0.00 N/A N/A 3.017±0.00 N/A N/A 6.417±0.00 3.295±0.00 0.541±0.00 N/A N/A N/A
ENST00000399613 3.861±0.00 3.183±0.00 1.722±0.00 0.401±0.00 2.110±0.35 2.705±0.89 0.807±0.55 2.556±0.00 0.396±0.00 1.144±0.47 1.029±0.71 6.211±4.38 1.321±0.79 8.589±1.48
ENST00000483842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000200840 ENST00000363970 N/A N/A N/A N/A N/A N/A 0.367±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000232587 ENST00000417549 0.591±0.00 0.617±0.00 0.320±0.00 0.327±0.00 1.363±0.86 1.180±0.73 0.178±0.00 0.433±0.00 0.311±0.25 0.403±0.13 0.238±0.09 1.194±0.86 0.143±0.11 0.319±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029647 ENSMUST00000031651 3.051±0.92 N/A 4.436±0.25 3.721±0.09 2.937±0.81 2.352±0.30 0.872±0.16 4.371±0.41 2.780±0.91 3.856±0.74 0.518±0.00 1.530±0.00 3.444±1.29 4.684±0.86
ENSMUST00000175807 N/A N/A N/A 0.734±0.00 N/A N/A N/A N/A 1.243±0.00 N/A 0.792±0.00 N/A 3.196±1.52 2.993±0.00
ENSMUST00000176202 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176505 N/A N/A N/A N/A N/A N/A N/A N/A 2.277±0.00 N/A N/A N/A N/A N/A
ENSMUST00000176553 N/A N/A N/A N/A 17.182±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176596 1.728±0.00 N/A N/A 1.554±0.63 4.296±2.05 2.450±0.00 1.501±0.61 2.210±0.20 1.775±0.87 2.687±0.00 0.380±0.01 3.925±1.00 2.136±0.53 9.330±3.06
ENSMUST00000176600 2.407±0.74 4.744±0.31 N/A 2.012±0.86 6.192±0.73 5.715±0.81 N/A N/A 1.917±1.22 3.572±0.00 0.265±0.00 6.828±1.75 1.520±0.28 5.041±0.51
ENSMUST00000176753 1.992±0.00 N/A N/A N/A 4.989±1.78 N/A 1.336±0.12 N/A 1.495±0.55 6.531±0.00 N/A 7.684±0.62 9.571±0.00 6.512±0.11
ENSMUST00000176806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176817 N/A N/A N/A 32.430±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 63.359±3.40 N/A
ENSMUST00000176856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177496 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029648 ENSMUST00000031652 3.408±1.03 8.526±3.19 N/A N/A 4.098±0.49 1.015±0.36 N/A N/A N/A 10.316±0.00 N/A 2.811±0.66 N/A N/A
ENSMUST00000031653 7.509±3.14 3.871±0.85 3.095±0.38 2.699±2.48 3.497±0.78 1.513±0.44 8.084±0.23 6.972±0.21 0.718±0.20 16.989±2.12 5.663±0.54 2.390±0.99 10.291±0.66 0.591±0.15
ENSMUST00000110529 2.138±0.48 1.781±0.24 1.792±0.17 1.601±0.90 1.121±0.15 0.574±0.13 2.527±0.57 2.006±0.14 0.328±0.16 5.154±0.76 2.536±0.23 1.077±0.37 87.446±58.28 0.135±0.00
ENSMUST00000125272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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