C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ELKS/RAB6-interacting/CAST family member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032279 Erc1-201 ENSMUSG00000030172 10090 - 6:119570804-119825226 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverMusclePlacentaTestisENSMUST00000032279
Transcript ID Adipose Adrenal Breast Colon Heart Liver Muscle Placenta Testis
ENSMUST00000032279 1.473±0.00 2.024±0.00 2.272±0.00 3.774±0.00 1.954±0.84 0.574±0.00 0.944±0.36 2.916±0.56 1.266±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006C1 CIL_0006C1_0002 CGP 6:119479668-119848167

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0017137 IDA Rab GTPase binding
GO:0042147 IDA retrograde transport, endosome to Golgi
GO:0045202 IDA synapse

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000041169 erc1a-201 protein_coding Danio_rerio 0 298
ENSDART00000012923 erc1a-002 protein_coding Danio_rerio 0 298
ENSDART00000149142 erc1a-001 protein_coding Danio_rerio 0 298
ENST00000347735 ERC1-008 nonsense_mediated_decay Homo_sapiens 0 1797
ENST00000355446 ERC1-011 protein_coding Homo_sapiens 0 4065
ENST00000360905 ERC1-014 protein_coding Homo_sapiens 0 4244
ENST00000397203 ERC1-201 protein_coding Homo_sapiens 0 2331
ENST00000440394 ERC1-013 nonsense_mediated_decay Homo_sapiens 0 2010
ENST00000515210 ERC1-012 processed_transcript Homo_sapiens 5e-24 115
ENST00000536573 ERC1-003 processed_transcript Homo_sapiens 0 1628
ENST00000538971 ERC1-016 retained_intron Homo_sapiens 0 1330
ENST00000539007 ERC1-017 retained_intron Homo_sapiens 0 721
ENST00000539802 ERC1-020 protein_coding Homo_sapiens 0 315
ENST00000542302 ERC1-010 nonsense_mediated_decay Homo_sapiens 0 3251
ENST00000543086 ERC1-001 protein_coding Homo_sapiens 0 2331
ENST00000543151 ERC1-002 retained_intron Homo_sapiens 0 403
ENST00000543263 ERC1-018 processed_transcript Homo_sapiens 0 542
ENST00000544277 ERC1-007 processed_transcript Homo_sapiens 0 270
ENST00000545318 ERC1-005 protein_coding Homo_sapiens 0 396
ENST00000545948 ERC1-004 nonsense_mediated_decay Homo_sapiens 0 1810
ENST00000546231 ERC1-015 protein_coding Homo_sapiens 0 4329
ENST00000588412 ERC1-019 nonsense_mediated_decay Homo_sapiens 0 1024
ENST00000589028 ERC1-202 protein_coding Homo_sapiens 0 4244
ENST00000589132 ERC1-023 protein_coding Homo_sapiens 0 638
ENST00000592048 ERC1-006 protein_coding Homo_sapiens 0 1162
ENST00000611180 ERC1-203 protein_coding Homo_sapiens 0 1810

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