C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lactate dehydrogenase B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032373 Ldhb-001 ENSMUSG00000030246 10090 - 6:142490249-142507957 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032373
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032373 102.071±27.96 32.931±4.84 272.235±51.91 245.039±160.46 47.428±23.57 10.752±0.46 888.311±23.50 933.622±68.10 6.643±5.97 102.068±14.40 135.320±43.70 221.861±24.16 208.949±87.30 71.559±3.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090B CIL_00090B_0002 VISTA 6:142366341-142969080
CIL_0005PS CIL_0005PS_0002 CGP 6:142422613-142507957
CIL_0005PV CIL_0005PV_0002 CGP 6:142490249-142571356

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004457 IEA lactate dehydrogenase activity
GO:0004459 IDA L-lactate dehydrogenase activity
GO:0005515 IEA protein binding
GO:0005739 IDA mitochondrion
GO:0006089 IEA lactate metabolic process
GO:0006096 IEA glycolytic process
GO:0016020 IEA membrane
GO:0019244 IC lactate biosynthetic process from pyruvate
GO:0019674 IEA NAD metabolic process
GO:0019900 IEA kinase binding
GO:0042802 IEA identical protein binding
GO:0044262 IEA cellular carbohydrate metabolic process
GO:0051287 IEA NAD binding
GO:0055114 IEA oxidation-reduction process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000350669 LDHB-001 protein_coding Homo_sapiens 0 1184
ENST00000396075 LDHB-004 protein_coding Homo_sapiens 0 782
ENST00000396076 LDHB-002 protein_coding Homo_sapiens 0 1173
ENST00000450584 LDHB-003 protein_coding Homo_sapiens 0 466
ENST00000470280 LDHB-006 retained_intron Homo_sapiens 0 392
ENST00000539782 LDHB-010 protein_coding Homo_sapiens 0 344

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