C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: amyloid beta (A4) precursor protein-binding, family A, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032732 Apba2-001 ENSMUSG00000030519 10090 + 7:64501706-64753870 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonLiverLungOvaryPlacentaTestisENSMUST00000032732
Transcript ID Adipose Bladder Brain Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000032732 0.160±0.00 0.194±0.03 33.682±17.69 0.043±0.00 0.521±0.15 0.086±0.00 0.138±0.00 0.248±0.03 0.007±0.00 0.068±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007CR CIL_0007CR_0002 CGP 7:64392645-64753870
CIL_0006HE CIL_0006HE_0002 CGP 7:64501706-65156570

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001540 IEA beta-amyloid binding
GO:0001701 IGI in utero embryonic development
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0007268 IGI synaptic transmission
GO:0007626 IGI locomotory behavior
GO:0010468 IGI regulation of gene expression
GO:0015031 IEA protein transport
GO:0035264 IGI multicellular organism growth

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000085661 apba2b-201 protein_coding Danio_rerio 0 1116
ENST00000382938 APBA2-006 retained_intron Homo_sapiens 0 335
ENST00000411764 APBA2-201 protein_coding Homo_sapiens 0 1295
ENST00000558259 APBA2-202 protein_coding Homo_sapiens 0 2713
ENST00000558330 APBA2-002 protein_coding Homo_sapiens 0 1295
ENST00000558358 APBA2-011 protein_coding Homo_sapiens 0 824
ENST00000558402 APBA2-001 protein_coding Homo_sapiens 0 2713
ENST00000559814 APBA2-003 retained_intron Homo_sapiens 0 1295
ENST00000560283 APBA2-009 protein_coding Homo_sapiens 0 416
ENST00000561069 APBA2-004 protein_coding Homo_sapiens 0 2708
ENST00000612449 APBA2-203 protein_coding Homo_sapiens 0 1295
ENST00000620457 APBA2-204 protein_coding Homo_sapiens 0 2713

Loading