C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000332496 SEMA4B-002 ENSG00000185033 9606 + 15:90184963-90229670 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000332496
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000332496 3.682±0.00 8.090±0.00 5.501±5.34 3.380±2.06 6.728±5.24 4.529±0.00 12.589±11.02 5.579±4.82 23.745±0.00 0.402±0.00 12.012±13.94 14.828±5.02 9.104±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079J CIL_00079J_0001 CGP 15:90083045-90229679
CIL_0008FE CIL_0008FE_0001 VISTA 15:90100149-90701385
CIL_0000SV CIL_0000SV_0001 CGP 15:90160604-90234047

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0007275 IEA multicellular organismal development
GO:0007399 IEA nervous system development
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032754 Sema4b-001 protein_coding Mus_musculus 0 2250
ENSMUST00000107383 Sema4b-002 protein_coding Mus_musculus 0 1607
ENSMUST00000123023 Sema4b-003 retained_intron Mus_musculus 0 311

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